Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CPNE4Q96A23 AC016396.2-201ENST00000562575 1417 ntBASIC15.53■□□□□ 0.08
CPNE4Q96A23 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CPNE4Q96A23 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC15.53■□□□□ 0.08
CPNE4Q96A23 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CPNE4Q96A23 AL513477.1-201ENST00000602865 2407 ntBASIC15.53■□□□□ 0.08
CPNE4Q96A23 AL391005.1-201ENST00000623953 2435 ntBASIC15.53■□□□□ 0.08
CPNE4Q96A23 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC15.53■□□□□ 0.08
CPNE4Q96A23 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CPNE4Q96A23 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC15.53■□□□□ 0.08
CPNE4Q96A23 AC067852.2-201ENST00000590513 2313 ntBASIC15.53■□□□□ 0.08
CPNE4Q96A23 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CPNE4Q96A23 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CPNE4Q96A23 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
CPNE4Q96A23 INIP-202ENST00000374236 874 ntTSL 2 BASIC15.53■□□□□ 0.08
CPNE4Q96A23 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC15.53■□□□□ 0.08
CPNE4Q96A23 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC15.53■□□□□ 0.08
CPNE4Q96A23 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
CPNE4Q96A23 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC15.53■□□□□ 0.08
CPNE4Q96A23 SDCCAG3P1-201ENST00000589292 1150 ntBASIC15.53■□□□□ 0.08
CPNE4Q96A23 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC15.53■□□□□ 0.08
CPNE4Q96A23 PRKN-208ENST00000610470 531 ntTSL 2 BASIC15.53■□□□□ 0.08
CPNE4Q96A23 PRKN-209ENST00000612485 225 ntTSL 5 BASIC15.53■□□□□ 0.08
CPNE4Q96A23 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CPNE4Q96A23 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CPNE4Q96A23 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CPNE4Q96A23 AL135999.2-201ENST00000622438 1686 ntBASIC15.53■□□□□ 0.08
CPNE4Q96A23 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CPNE4Q96A23 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CPNE4Q96A23 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CPNE4Q96A23 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CPNE4Q96A23 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC15.53■□□□□ 0.08
CPNE4Q96A23 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CPNE4Q96A23 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC15.53■□□□□ 0.08
CPNE4Q96A23 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
CPNE4Q96A23 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC15.53■□□□□ 0.08
CPNE4Q96A23 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CPNE4Q96A23 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CPNE4Q96A23 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
CPNE4Q96A23 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
CPNE4Q96A23 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CPNE4Q96A23 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CPNE4Q96A23 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
CPNE4Q96A23 AC099398.1-201ENST00000567919 2776 ntBASIC15.52■□□□□ 0.08
CPNE4Q96A23 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CPNE4Q96A23 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CPNE4Q96A23 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC15.52■□□□□ 0.08
CPNE4Q96A23 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CPNE4Q96A23 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC15.52■□□□□ 0.08
CPNE4Q96A23 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC15.52■□□□□ 0.08
CPNE4Q96A23 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
CPNE4Q96A23 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC15.52■□□□□ 0.08
CPNE4Q96A23 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC15.52■□□□□ 0.08
CPNE4Q96A23 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC15.52■□□□□ 0.08
CPNE4Q96A23 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC15.52■□□□□ 0.08
CPNE4Q96A23 AC008735.5-201ENST00000623544 497 ntBASIC15.52■□□□□ 0.08
CPNE4Q96A23 AC148477.8-201ENST00000624298 468 ntBASIC15.52■□□□□ 0.08
CPNE4Q96A23 FAM215A-202ENST00000632077 792 ntBASIC15.52■□□□□ 0.08
CPNE4Q96A23 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
CPNE4Q96A23 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CPNE4Q96A23 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CPNE4Q96A23 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CPNE4Q96A23 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CPNE4Q96A23 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CPNE4Q96A23 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC15.52■□□□□ 0.07
CPNE4Q96A23 LTF-203ENST00000426532 2494 ntTSL 2 BASIC15.52■□□□□ 0.07
CPNE4Q96A23 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
CPNE4Q96A23 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CPNE4Q96A23 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CPNE4Q96A23 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.07
CPNE4Q96A23 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CPNE4Q96A23 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC15.52■□□□□ 0.07
CPNE4Q96A23 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CPNE4Q96A23 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CPNE4Q96A23 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
CPNE4Q96A23 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
CPNE4Q96A23 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
CPNE4Q96A23 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CPNE4Q96A23 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
CPNE4Q96A23 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CPNE4Q96A23 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CPNE4Q96A23 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CPNE4Q96A23 HLA-A-201ENST00000376802 1334 ntBASIC15.51■□□□□ 0.07
CPNE4Q96A23 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
CPNE4Q96A23 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CPNE4Q96A23 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CPNE4Q96A23 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
CPNE4Q96A23 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CPNE4Q96A23 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CPNE4Q96A23 HNRNPDP1-201ENST00000439535 754 ntBASIC15.51■□□□□ 0.07
CPNE4Q96A23 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC15.51■□□□□ 0.07
CPNE4Q96A23 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CPNE4Q96A23 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC15.51■□□□□ 0.07
CPNE4Q96A23 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC15.51■□□□□ 0.07
CPNE4Q96A23 AL139424.1-201ENST00000607572 797 ntBASIC15.51■□□□□ 0.07
CPNE4Q96A23 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CPNE4Q96A23 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC15.51■□□□□ 0.07
CPNE4Q96A23 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC15.51■□□□□ 0.07
CPNE4Q96A23 MIR1199-201ENST00000621445 119 ntBASIC15.51■□□□□ 0.07
CPNE4Q96A23 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms