Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 GSTM3-201ENST00000256594 4046 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 AC040169.1-201ENST00000565382 521 ntBASIC5.36□□□□□ -1.55
SYNE1Q8NF91 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 MED15P5-201ENST00000423150 992 ntBASIC5.36□□□□□ -1.55
SYNE1Q8NF91 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 Z83851.2-201ENST00000609564 659 ntBASIC5.36□□□□□ -1.55
SYNE1Q8NF91 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SYNE1Q8NF91 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 IGHV3-65-201ENST00000523210 341 ntBASIC5.35□□□□□ -1.55
SYNE1Q8NF91 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 AL049757.1-201ENST00000616842 1596 ntBASIC5.35□□□□□ -1.55
SYNE1Q8NF91 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 AC073621.1-201ENST00000392730 636 ntBASIC5.35□□□□□ -1.55
SYNE1Q8NF91 CRCP-205ENST00000431089 942 ntTSL 2 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 RBM17P3-201ENST00000417687 1192 ntBASIC5.35□□□□□ -1.55
SYNE1Q8NF91 ALG1L5P-201ENST00000482043 771 ntBASIC5.35□□□□□ -1.55
SYNE1Q8NF91 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 AC105339.3-201ENST00000560043 636 ntBASIC5.35□□□□□ -1.55
SYNE1Q8NF91 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 AC009154.2-201ENST00000621177 724 ntBASIC5.35□□□□□ -1.55
SYNE1Q8NF91 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC5.35□□□□□ -1.55
SYNE1Q8NF91 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC5.35□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 93.3 ms