Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
PRKDCP78527 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
PRKDCP78527 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
PRKDCP78527 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
PRKDCP78527 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
PRKDCP78527 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC12.28□□□□□ -0.44
PRKDCP78527 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
PRKDCP78527 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
PRKDCP78527 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
PRKDCP78527 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC12.28□□□□□ -0.44
PRKDCP78527 GGCT-203ENST00000409144 836 ntTSL 2 BASIC12.28□□□□□ -0.44
PRKDCP78527 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC12.28□□□□□ -0.44
PRKDCP78527 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
PRKDCP78527 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
PRKDCP78527 PAM16-204ENST00000571941 674 ntTSL 3 BASIC12.28□□□□□ -0.44
PRKDCP78527 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
PRKDCP78527 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC12.28□□□□□ -0.44
PRKDCP78527 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC12.28□□□□□ -0.44
PRKDCP78527 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC12.28□□□□□ -0.44
PRKDCP78527 LINC00896-202ENST00000609602 2128 ntBASIC12.28□□□□□ -0.44
PRKDCP78527 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
PRKDCP78527 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
PRKDCP78527 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC12.28□□□□□ -0.44
PRKDCP78527 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
PRKDCP78527 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC12.28□□□□□ -0.44
PRKDCP78527 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
PRKDCP78527 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC12.28□□□□□ -0.44
PRKDCP78527 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
PRKDCP78527 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC12.28□□□□□ -0.44
PRKDCP78527 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC12.28□□□□□ -0.44
PRKDCP78527 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC12.28□□□□□ -0.44
PRKDCP78527 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC12.28□□□□□ -0.44
PRKDCP78527 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC12.28□□□□□ -0.44
PRKDCP78527 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC12.28□□□□□ -0.44
PRKDCP78527 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
PRKDCP78527 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
PRKDCP78527 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
PRKDCP78527 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC12.27□□□□□ -0.44
PRKDCP78527 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.44
PRKDCP78527 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC12.27□□□□□ -0.44
PRKDCP78527 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC12.27□□□□□ -0.44
PRKDCP78527 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC12.27□□□□□ -0.44
PRKDCP78527 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC12.27□□□□□ -0.44
PRKDCP78527 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC12.27□□□□□ -0.44
PRKDCP78527 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC12.27□□□□□ -0.44
PRKDCP78527 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
PRKDCP78527 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC12.27□□□□□ -0.44
PRKDCP78527 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
PRKDCP78527 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC12.27□□□□□ -0.44
PRKDCP78527 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
PRKDCP78527 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
PRKDCP78527 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC12.27□□□□□ -0.45
PRKDCP78527 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC12.27□□□□□ -0.45
PRKDCP78527 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC12.27□□□□□ -0.45
PRKDCP78527 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC12.27□□□□□ -0.45
PRKDCP78527 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC12.27□□□□□ -0.45
PRKDCP78527 CLDN5-201ENST00000403084 2357 ntBASIC12.27□□□□□ -0.45
PRKDCP78527 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
PRKDCP78527 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
PRKDCP78527 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC12.27□□□□□ -0.45
PRKDCP78527 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC12.27□□□□□ -0.45
PRKDCP78527 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
PRKDCP78527 AC012569.1-201ENST00000591191 1524 ntBASIC12.27□□□□□ -0.45
PRKDCP78527 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
PRKDCP78527 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
PRKDCP78527 CETN4P-206ENST00000642099 2168 ntBASIC12.27□□□□□ -0.45
PRKDCP78527 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
PRKDCP78527 RPS19-201ENST00000221975 500 ntTSL 3 BASIC12.27□□□□□ -0.45
PRKDCP78527 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
PRKDCP78527 ENSA-206ENST00000361631 725 ntTSL 2 BASIC12.27□□□□□ -0.45
PRKDCP78527 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
PRKDCP78527 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC12.27□□□□□ -0.45
PRKDCP78527 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC12.27□□□□□ -0.45
PRKDCP78527 DUTP2-201ENST00000519164 463 ntBASIC12.27□□□□□ -0.45
PRKDCP78527 HNRNPUP1-201ENST00000554987 333 ntBASIC12.27□□□□□ -0.45
PRKDCP78527 AC025048.3-201ENST00000590609 569 ntBASIC12.27□□□□□ -0.45
PRKDCP78527 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC12.27□□□□□ -0.45
PRKDCP78527 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
PRKDCP78527 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC12.27□□□□□ -0.45
PRKDCP78527 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC12.27□□□□□ -0.45
PRKDCP78527 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
PRKDCP78527 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
PRKDCP78527 AC091046.1-201ENST00000331871 207 ntBASIC12.26□□□□□ -0.45
PRKDCP78527 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
PRKDCP78527 GPAA1P2-201ENST00000417923 928 ntBASIC12.26□□□□□ -0.45
PRKDCP78527 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
PRKDCP78527 FO681548.1-201ENST00000455617 1132 ntBASIC12.26□□□□□ -0.45
PRKDCP78527 AC044860.1-202ENST00000559481 777 ntBASIC12.26□□□□□ -0.45
PRKDCP78527 LITAF-210ENST00000571976 548 ntTSL 2 BASIC12.26□□□□□ -0.45
PRKDCP78527 LITAF-214ENST00000574703 486 ntTSL 2 BASIC12.26□□□□□ -0.45
PRKDCP78527 BTNL10-201ENST00000595971 695 ntBASIC12.26□□□□□ -0.45
PRKDCP78527 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC12.26□□□□□ -0.45
PRKDCP78527 5S_rRNA.22-201ENST00000614916 106 ntBASIC12.26□□□□□ -0.45
PRKDCP78527 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC12.26□□□□□ -0.45
PRKDCP78527 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC12.26□□□□□ -0.45
PRKDCP78527 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC12.26□□□□□ -0.45
PRKDCP78527 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
PRKDCP78527 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC12.26□□□□□ -0.45
PRKDCP78527 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
PRKDCP78527 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms