Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
YBX1P67809 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC16.85■□□□□ 0.29
YBX1P67809 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.85■□□□□ 0.29
YBX1P67809 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
YBX1P67809 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
YBX1P67809 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
YBX1P67809 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
YBX1P67809 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
YBX1P67809 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
YBX1P67809 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC16.85■□□□□ 0.29
YBX1P67809 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC16.84■□□□□ 0.29
YBX1P67809 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
YBX1P67809 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.84■□□□□ 0.29
YBX1P67809 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
YBX1P67809 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC16.84■□□□□ 0.29
YBX1P67809 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.84■□□□□ 0.29
YBX1P67809 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
YBX1P67809 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.84■□□□□ 0.29
YBX1P67809 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC16.84■□□□□ 0.29
YBX1P67809 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
YBX1P67809 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
YBX1P67809 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
YBX1P67809 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.84■□□□□ 0.29
YBX1P67809 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC16.84■□□□□ 0.29
YBX1P67809 IGHV3-52-201ENST00000519770 353 ntBASIC16.84■□□□□ 0.29
YBX1P67809 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC16.84■□□□□ 0.29
YBX1P67809 TK1-204ENST00000590430 683 ntTSL 3 BASIC16.84■□□□□ 0.29
YBX1P67809 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC16.84■□□□□ 0.29
YBX1P67809 LINC01711-201ENST00000598340 967 ntBASIC16.84■□□□□ 0.29
YBX1P67809 AL139327.4-201ENST00000612362 153 ntBASIC16.84■□□□□ 0.29
YBX1P67809 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
YBX1P67809 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.84■□□□□ 0.29
YBX1P67809 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
YBX1P67809 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
YBX1P67809 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
YBX1P67809 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
YBX1P67809 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC16.84■□□□□ 0.29
YBX1P67809 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
YBX1P67809 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
YBX1P67809 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
YBX1P67809 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
YBX1P67809 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC16.84■□□□□ 0.29
YBX1P67809 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.84■□□□□ 0.29
YBX1P67809 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
YBX1P67809 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.84■□□□□ 0.29
YBX1P67809 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
YBX1P67809 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
YBX1P67809 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
YBX1P67809 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
YBX1P67809 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
YBX1P67809 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
YBX1P67809 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
YBX1P67809 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
YBX1P67809 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
YBX1P67809 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
YBX1P67809 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
YBX1P67809 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
YBX1P67809 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
YBX1P67809 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
YBX1P67809 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
YBX1P67809 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
YBX1P67809 SPDYE21P-201ENST00000413323 827 ntBASIC16.83■□□□□ 0.28
YBX1P67809 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC16.83■□□□□ 0.28
YBX1P67809 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
YBX1P67809 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC16.83■□□□□ 0.28
YBX1P67809 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC16.83■□□□□ 0.28
YBX1P67809 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC16.83■□□□□ 0.28
YBX1P67809 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
YBX1P67809 CYB561-217ENST00000582997 877 ntTSL 5 BASIC16.83■□□□□ 0.28
YBX1P67809 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
YBX1P67809 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
YBX1P67809 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
YBX1P67809 AC079776.2-201ENST00000641154 1609 ntBASIC16.83■□□□□ 0.28
YBX1P67809 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
YBX1P67809 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
YBX1P67809 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
YBX1P67809 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
YBX1P67809 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
YBX1P67809 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
YBX1P67809 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
YBX1P67809 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
YBX1P67809 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
YBX1P67809 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
YBX1P67809 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
YBX1P67809 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
YBX1P67809 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.82■□□□□ 0.28
YBX1P67809 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
YBX1P67809 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
YBX1P67809 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
YBX1P67809 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
YBX1P67809 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.82■□□□□ 0.28
YBX1P67809 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
YBX1P67809 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.82■□□□□ 0.28
YBX1P67809 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
YBX1P67809 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
YBX1P67809 TLE1-202ENST00000376484 666 ntTSL 3 BASIC16.82■□□□□ 0.28
YBX1P67809 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.82■□□□□ 0.28
YBX1P67809 RBM17P3-201ENST00000417687 1192 ntBASIC16.82■□□□□ 0.28
YBX1P67809 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
YBX1P67809 SRP19-202ENST00000445150 833 ntTSL 2 BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 87.4 ms