Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIM2P55344 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIM2P55344 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
LIM2P55344 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIM2P55344 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIM2P55344 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LIM2P55344 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.4■□□□□ 0.22
LIM2P55344 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIM2P55344 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIM2P55344 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIM2P55344 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC16.4■□□□□ 0.22
LIM2P55344 OR6D1P-202ENST00000641007 5290 ntBASIC16.4■□□□□ 0.22
LIM2P55344 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LIM2P55344 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.4■□□□□ 0.22
LIM2P55344 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIM2P55344 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIM2P55344 AC124067.4-201ENST00000519691 2379 ntBASIC16.4■□□□□ 0.22
LIM2P55344 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC16.4■□□□□ 0.22
LIM2P55344 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LIM2P55344 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIM2P55344 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.39■□□□□ 0.21
LIM2P55344 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
LIM2P55344 AC097637.2-201ENST00000624096 1997 ntBASIC16.39■□□□□ 0.21
LIM2P55344 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIM2P55344 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LIM2P55344 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.39■□□□□ 0.21
LIM2P55344 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.39■□□□□ 0.21
LIM2P55344 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIM2P55344 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIM2P55344 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIM2P55344 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LIM2P55344 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC16.39■□□□□ 0.21
LIM2P55344 AC079781.3-201ENST00000449110 356 ntBASIC16.39■□□□□ 0.21
LIM2P55344 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC16.39■□□□□ 0.21
LIM2P55344 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LIM2P55344 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC16.39■□□□□ 0.21
LIM2P55344 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.39■□□□□ 0.21
LIM2P55344 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.39■□□□□ 0.21
LIM2P55344 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
LIM2P55344 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
LIM2P55344 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIM2P55344 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIM2P55344 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIM2P55344 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIM2P55344 AC116353.5-201ENST00000638148 1699 ntBASIC16.39■□□□□ 0.21
LIM2P55344 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIM2P55344 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIM2P55344 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIM2P55344 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIM2P55344 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIM2P55344 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC16.38■□□□□ 0.21
LIM2P55344 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.38■□□□□ 0.21
LIM2P55344 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.38■□□□□ 0.21
LIM2P55344 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
LIM2P55344 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LIM2P55344 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.38■□□□□ 0.21
LIM2P55344 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
LIM2P55344 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
LIM2P55344 AL121761.2-201ENST00000598007 1648 ntBASIC16.38■□□□□ 0.21
LIM2P55344 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.38■□□□□ 0.21
LIM2P55344 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.38■□□□□ 0.21
LIM2P55344 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.38■□□□□ 0.21
LIM2P55344 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.38■□□□□ 0.21
LIM2P55344 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
LIM2P55344 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.38■□□□□ 0.21
LIM2P55344 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIM2P55344 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIM2P55344 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.38■□□□□ 0.21
LIM2P55344 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LIM2P55344 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
LIM2P55344 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.38■□□□□ 0.21
LIM2P55344 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LIM2P55344 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.38■□□□□ 0.21
LIM2P55344 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC16.38■□□□□ 0.21
LIM2P55344 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.38■□□□□ 0.21
LIM2P55344 AC021087.4-201ENST00000563761 564 ntBASIC16.38■□□□□ 0.21
LIM2P55344 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC16.38■□□□□ 0.21
LIM2P55344 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC16.38■□□□□ 0.21
LIM2P55344 MTDHP4-201ENST00000600287 670 ntBASIC16.38■□□□□ 0.21
LIM2P55344 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16.38■□□□□ 0.21
LIM2P55344 AL031008.1-201ENST00000619963 541 ntBASIC16.38■□□□□ 0.21
LIM2P55344 TP73-AS1-207ENST00000624167 988 ntBASIC16.38■□□□□ 0.21
LIM2P55344 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC16.38■□□□□ 0.21
LIM2P55344 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
LIM2P55344 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16.38■□□□□ 0.21
LIM2P55344 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
LIM2P55344 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
LIM2P55344 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIM2P55344 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LIM2P55344 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIM2P55344 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIM2P55344 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC16.38■□□□□ 0.21
LIM2P55344 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.38■□□□□ 0.21
LIM2P55344 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC16.38■□□□□ 0.21
LIM2P55344 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.38■□□□□ 0.21
LIM2P55344 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC16.38■□□□□ 0.21
LIM2P55344 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
LIM2P55344 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LIM2P55344 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.37■□□□□ 0.21
LIM2P55344 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms