Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
CDH12P55289 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDH12P55289 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDH12P55289 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.13■□□□□ 0.17
CDH12P55289 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDH12P55289 PC-208ENST00000529047 1607 ntTSL 3 BASIC16.13■□□□□ 0.17
CDH12P55289 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC16.13■□□□□ 0.17
CDH12P55289 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDH12P55289 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CDH12P55289 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDH12P55289 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CDH12P55289 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC16.13■□□□□ 0.17
CDH12P55289 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CDH12P55289 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC16.13■□□□□ 0.17
CDH12P55289 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC16.13■□□□□ 0.17
CDH12P55289 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
CDH12P55289 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDH12P55289 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.13■□□□□ 0.17
CDH12P55289 AC093525.9-201ENST00000624961 1746 ntBASIC16.13■□□□□ 0.17
CDH12P55289 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.13■□□□□ 0.17
CDH12P55289 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CDH12P55289 UBC-206ENST00000538617 1303 ntTSL 5 BASIC16.13■□□□□ 0.17
CDH12P55289 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CDH12P55289 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.13■□□□□ 0.17
CDH12P55289 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.13■□□□□ 0.17
CDH12P55289 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDH12P55289 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CDH12P55289 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.12■□□□□ 0.17
CDH12P55289 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.12■□□□□ 0.17
CDH12P55289 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH12P55289 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH12P55289 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH12P55289 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH12P55289 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.12■□□□□ 0.17
CDH12P55289 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
CDH12P55289 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH12P55289 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CDH12P55289 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.12■□□□□ 0.17
CDH12P55289 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC16.12■□□□□ 0.17
CDH12P55289 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH12P55289 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
CDH12P55289 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.12■□□□□ 0.17
CDH12P55289 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH12P55289 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH12P55289 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CDH12P55289 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH12P55289 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH12P55289 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC16.12■□□□□ 0.17
CDH12P55289 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH12P55289 AC008894.3-201ENST00000624324 3103 ntBASIC16.12■□□□□ 0.17
CDH12P55289 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CDH12P55289 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH12P55289 BAALC-202ENST00000306391 243 ntTSL 5 BASIC16.12■□□□□ 0.17
CDH12P55289 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH12P55289 BAALC-204ENST00000330955 222 ntTSL 5 BASIC16.12■□□□□ 0.17
CDH12P55289 RCN1P1-201ENST00000400413 996 ntBASIC16.12■□□□□ 0.17
CDH12P55289 AC096633.1-201ENST00000422446 749 ntBASIC16.12■□□□□ 0.17
CDH12P55289 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC16.12■□□□□ 0.17
CDH12P55289 AC022616.7-201ENST00000525383 220 ntBASIC16.12■□□□□ 0.17
CDH12P55289 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC16.12■□□□□ 0.17
CDH12P55289 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC16.12■□□□□ 0.17
CDH12P55289 RN7SL850P-201ENST00000579959 291 ntBASIC16.12■□□□□ 0.17
CDH12P55289 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC16.12■□□□□ 0.17
CDH12P55289 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CDH12P55289 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC16.12■□□□□ 0.17
CDH12P55289 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC16.12■□□□□ 0.17
CDH12P55289 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH12P55289 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH12P55289 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC16.12■□□□□ 0.17
CDH12P55289 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH12P55289 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.12■□□□□ 0.17
CDH12P55289 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.12■□□□□ 0.17
CDH12P55289 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH12P55289 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH12P55289 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CDH12P55289 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH12P55289 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH12P55289 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
CDH12P55289 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.12■□□□□ 0.17
CDH12P55289 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH12P55289 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH12P55289 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
CDH12P55289 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC16.11■□□□□ 0.17
CDH12P55289 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
CDH12P55289 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC16.11■□□□□ 0.17
CDH12P55289 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CDH12P55289 AMT-250ENST00000637682 1823 ntTSL 5 BASIC16.11■□□□□ 0.17
CDH12P55289 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH12P55289 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH12P55289 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH12P55289 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH12P55289 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
CDH12P55289 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH12P55289 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.11■□□□□ 0.17
CDH12P55289 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC16.11■□□□□ 0.17
CDH12P55289 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC16.11■□□□□ 0.17
CDH12P55289 AL671277.2-201ENST00000458060 996 ntBASIC16.11■□□□□ 0.17
CDH12P55289 DUX4L26-201ENST00000489078 1255 ntBASIC16.11■□□□□ 0.17
CDH12P55289 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC16.11■□□□□ 0.17
CDH12P55289 CLN6-204ENST00000564752 900 ntTSL 3 BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms