Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VCPP55072 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VCPP55072 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VCPP55072 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
VCPP55072 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC18.5■□□□□ 0.55
VCPP55072 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VCPP55072 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VCPP55072 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VCPP55072 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC18.5■□□□□ 0.55
VCPP55072 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
VCPP55072 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VCPP55072 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
VCPP55072 ALG1L5P-201ENST00000482043 771 ntBASIC18.5■□□□□ 0.55
VCPP55072 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC18.5■□□□□ 0.55
VCPP55072 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC18.5■□□□□ 0.55
VCPP55072 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC18.5■□□□□ 0.55
VCPP55072 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC18.5■□□□□ 0.55
VCPP55072 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
VCPP55072 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VCPP55072 AL138831.2-201ENST00000606564 490 ntBASIC18.5■□□□□ 0.55
VCPP55072 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC18.5■□□□□ 0.55
VCPP55072 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC18.5■□□□□ 0.55
VCPP55072 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VCPP55072 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
VCPP55072 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.5■□□□□ 0.55
VCPP55072 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC18.5■□□□□ 0.55
VCPP55072 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VCPP55072 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VCPP55072 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VCPP55072 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VCPP55072 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC18.5■□□□□ 0.55
VCPP55072 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VCPP55072 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
VCPP55072 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
VCPP55072 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VCPP55072 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VCPP55072 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VCPP55072 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VCPP55072 FUOM-202ENST00000368551 628 ntTSL 3 BASIC18.49■□□□□ 0.55
VCPP55072 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VCPP55072 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VCPP55072 AC254562.1-201ENST00000417586 456 ntBASIC18.49■□□□□ 0.55
VCPP55072 YBX1P5-201ENST00000509441 847 ntBASIC18.49■□□□□ 0.55
VCPP55072 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
VCPP55072 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
VCPP55072 AP002472.1-201ENST00000577490 586 ntBASIC18.49■□□□□ 0.55
VCPP55072 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC18.49■□□□□ 0.55
VCPP55072 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC18.49■□□□□ 0.55
VCPP55072 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC18.49■□□□□ 0.55
VCPP55072 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC18.49■□□□□ 0.55
VCPP55072 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC18.49■□□□□ 0.55
VCPP55072 COPE-211ENST00000600932 1144 ntTSL 5 BASIC18.49■□□□□ 0.55
VCPP55072 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC18.49■□□□□ 0.55
VCPP55072 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
VCPP55072 AL138688.1-201ENST00000624851 1594 ntBASIC18.49■□□□□ 0.55
VCPP55072 LINC00304-203ENST00000565008 1864 ntBASIC18.49■□□□□ 0.55
VCPP55072 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
VCPP55072 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VCPP55072 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VCPP55072 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VCPP55072 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC18.49■□□□□ 0.55
VCPP55072 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
VCPP55072 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC18.49■□□□□ 0.55
VCPP55072 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC18.49■□□□□ 0.55
VCPP55072 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
VCPP55072 AL023806.1-201ENST00000603994 1649 ntBASIC18.49■□□□□ 0.55
VCPP55072 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
VCPP55072 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC18.49■□□□□ 0.55
VCPP55072 AC125634.1-201ENST00000438758 1403 ntBASIC18.49■□□□□ 0.55
VCPP55072 PKD1P1-201ENST00000458669 6805 ntBASIC18.49■□□□□ 0.55
VCPP55072 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
VCPP55072 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC18.49■□□□□ 0.55
VCPP55072 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
VCPP55072 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VCPP55072 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
VCPP55072 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VCPP55072 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC18.48■□□□□ 0.55
VCPP55072 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
VCPP55072 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
VCPP55072 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VCPP55072 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC18.48■□□□□ 0.55
VCPP55072 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VCPP55072 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
VCPP55072 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VCPP55072 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VCPP55072 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC18.48■□□□□ 0.55
VCPP55072 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC18.48■□□□□ 0.55
VCPP55072 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC18.48■□□□□ 0.55
VCPP55072 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC18.48■□□□□ 0.55
VCPP55072 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC18.48■□□□□ 0.55
VCPP55072 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC18.48■□□□□ 0.55
VCPP55072 AC064836.3-201ENST00000607928 673 ntBASIC18.48■□□□□ 0.55
VCPP55072 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
VCPP55072 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC18.48■□□□□ 0.55
VCPP55072 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC18.48■□□□□ 0.55
VCPP55072 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
VCPP55072 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
VCPP55072 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VCPP55072 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC18.48■□□□□ 0.55
VCPP55072 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms