Protein–RNA interactions for Protein: P43681

CHRNA4, Neuronal acetylcholine receptor subunit alpha-4, humanhuman

Predictions only

Length 627 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4P43681 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
CHRNA4P43681 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHRNA4P43681 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC17.42■□□□□ 0.38
CHRNA4P43681 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC17.42■□□□□ 0.38
CHRNA4P43681 EGFEM1P-202ENST00000431685 1563 ntBASIC17.42■□□□□ 0.38
CHRNA4P43681 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHRNA4P43681 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHRNA4P43681 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHRNA4P43681 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
CHRNA4P43681 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC17.42■□□□□ 0.38
CHRNA4P43681 SAPCD2P3-201ENST00000455031 850 ntBASIC17.42■□□□□ 0.38
CHRNA4P43681 S100A2-206ENST00000497140 697 ntTSL 2 BASIC17.42■□□□□ 0.38
CHRNA4P43681 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17.42■□□□□ 0.38
CHRNA4P43681 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHRNA4P43681 COX5A-202ENST00000562233 441 ntTSL 3 BASIC17.42■□□□□ 0.38
CHRNA4P43681 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHRNA4P43681 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHRNA4P43681 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
CHRNA4P43681 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHRNA4P43681 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.42■□□□□ 0.38
CHRNA4P43681 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHRNA4P43681 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.42■□□□□ 0.38
CHRNA4P43681 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
CHRNA4P43681 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.42■□□□□ 0.38
CHRNA4P43681 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHRNA4P43681 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHRNA4P43681 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC17.42■□□□□ 0.38
CHRNA4P43681 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.42■□□□□ 0.38
CHRNA4P43681 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC17.42■□□□□ 0.38
CHRNA4P43681 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHRNA4P43681 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHRNA4P43681 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHRNA4P43681 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHRNA4P43681 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHRNA4P43681 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHRNA4P43681 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHRNA4P43681 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHRNA4P43681 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHRNA4P43681 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
CHRNA4P43681 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHRNA4P43681 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.41■□□□□ 0.38
CHRNA4P43681 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHRNA4P43681 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.41■□□□□ 0.38
CHRNA4P43681 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
CHRNA4P43681 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC17.41■□□□□ 0.38
CHRNA4P43681 TOLLIP-AS1-201ENST00000530897 939 ntBASIC17.41■□□□□ 0.38
CHRNA4P43681 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC17.41■□□□□ 0.38
CHRNA4P43681 PAM16-208ENST00000573553 722 ntTSL 2 BASIC17.41■□□□□ 0.38
CHRNA4P43681 LINC01711-201ENST00000598340 967 ntBASIC17.41■□□□□ 0.38
CHRNA4P43681 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHRNA4P43681 AC064862.7-201ENST00000604520 867 ntBASIC17.41■□□□□ 0.38
CHRNA4P43681 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
CHRNA4P43681 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.41■□□□□ 0.38
CHRNA4P43681 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC17.41■□□□□ 0.38
CHRNA4P43681 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHRNA4P43681 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHRNA4P43681 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.41■□□□□ 0.38
CHRNA4P43681 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHRNA4P43681 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
CHRNA4P43681 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHRNA4P43681 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHRNA4P43681 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC17.41■□□□□ 0.38
CHRNA4P43681 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
CHRNA4P43681 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHRNA4P43681 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.4■□□□□ 0.38
CHRNA4P43681 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA4P43681 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA4P43681 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.4■□□□□ 0.38
CHRNA4P43681 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CHRNA4P43681 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA4P43681 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA4P43681 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
CHRNA4P43681 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
CHRNA4P43681 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CHRNA4P43681 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA4P43681 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA4P43681 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA4P43681 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA4P43681 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA4P43681 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA4P43681 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA4P43681 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA4P43681 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA4P43681 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CHRNA4P43681 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
CHRNA4P43681 LINC00982-205ENST00000420957 435 ntBASIC17.4■□□□□ 0.38
CHRNA4P43681 EMBP1-201ENST00000458200 901 ntBASIC17.4■□□□□ 0.38
CHRNA4P43681 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CHRNA4P43681 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC17.4■□□□□ 0.38
CHRNA4P43681 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA4P43681 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC17.4■□□□□ 0.38
CHRNA4P43681 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC17.4■□□□□ 0.38
CHRNA4P43681 AL139288.1-201ENST00000623748 933 ntBASIC17.4■□□□□ 0.38
CHRNA4P43681 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CHRNA4P43681 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC17.4■□□□□ 0.38
CHRNA4P43681 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA4P43681 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA4P43681 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA4P43681 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHRNA4P43681 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms