Protein–RNA interactions for Protein: P25942

CD40, Tumor necrosis factor receptor superfamily member 5, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD40P25942 MIR1233-1-201ENST00000408722 82 ntBASIC14.88□□□□□ -0.03
CD40P25942 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CD40P25942 AC023274.1-201ENST00000418278 595 ntBASIC14.88□□□□□ -0.03
CD40P25942 HNRNPA1P28-201ENST00000424481 961 ntBASIC14.88□□□□□ -0.03
CD40P25942 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC14.88□□□□□ -0.03
CD40P25942 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC14.88□□□□□ -0.03
CD40P25942 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC14.88□□□□□ -0.03
CD40P25942 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC14.88□□□□□ -0.03
CD40P25942 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
CD40P25942 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC14.88□□□□□ -0.03
CD40P25942 CROCCP1-201ENST00000426910 5675 ntBASIC14.88□□□□□ -0.03
CD40P25942 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CD40P25942 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CD40P25942 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
CD40P25942 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CD40P25942 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CD40P25942 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CD40P25942 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CD40P25942 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC14.88□□□□□ -0.03
CD40P25942 AC134043.2-201ENST00000624206 2238 ntBASIC14.88□□□□□ -0.03
CD40P25942 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CD40P25942 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
CD40P25942 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CD40P25942 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
CD40P25942 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CD40P25942 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CD40P25942 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CD40P25942 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CD40P25942 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC14.87□□□□□ -0.03
CD40P25942 GNE-204ENST00000539208 2190 ntTSL 2 BASIC14.87□□□□□ -0.03
CD40P25942 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CD40P25942 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC14.87□□□□□ -0.03
CD40P25942 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CD40P25942 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CD40P25942 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CD40P25942 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CD40P25942 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CD40P25942 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC14.87□□□□□ -0.03
CD40P25942 AC004832.2-201ENST00000426397 482 ntBASIC14.87□□□□□ -0.03
CD40P25942 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC14.87□□□□□ -0.03
CD40P25942 DNAJB3-201ENST00000446806 729 ntBASIC14.87□□□□□ -0.03
CD40P25942 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC14.87□□□□□ -0.03
CD40P25942 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC14.87□□□□□ -0.03
CD40P25942 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC14.87□□□□□ -0.03
CD40P25942 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CD40P25942 AC139530.3-201ENST00000620344 690 ntBASIC14.87□□□□□ -0.03
CD40P25942 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CD40P25942 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CD40P25942 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CD40P25942 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
CD40P25942 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CD40P25942 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CD40P25942 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CD40P25942 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC14.87□□□□□ -0.03
CD40P25942 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CD40P25942 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
CD40P25942 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CD40P25942 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
CD40P25942 GNAS-203ENST00000306120 1878 ntBASIC14.86□□□□□ -0.03
CD40P25942 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CD40P25942 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC14.86□□□□□ -0.03
CD40P25942 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CD40P25942 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CD40P25942 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
CD40P25942 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CD40P25942 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC14.86□□□□□ -0.03
CD40P25942 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC14.86□□□□□ -0.03
CD40P25942 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC14.86□□□□□ -0.03
CD40P25942 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
CD40P25942 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
CD40P25942 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CD40P25942 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CD40P25942 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CD40P25942 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
CD40P25942 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CD40P25942 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CD40P25942 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CD40P25942 YBX2P1-201ENST00000394192 760 ntBASIC14.86□□□□□ -0.03
CD40P25942 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
CD40P25942 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC14.86□□□□□ -0.03
CD40P25942 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC14.86□□□□□ -0.03
CD40P25942 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC14.86□□□□□ -0.03
CD40P25942 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC14.86□□□□□ -0.03
CD40P25942 OR7E47P-204ENST00000575924 449 ntBASIC14.86□□□□□ -0.03
CD40P25942 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC14.86□□□□□ -0.03
CD40P25942 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC14.86□□□□□ -0.03
CD40P25942 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC14.86□□□□□ -0.03
CD40P25942 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
CD40P25942 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CD40P25942 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
CD40P25942 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
CD40P25942 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
CD40P25942 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CD40P25942 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CD40P25942 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CD40P25942 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
CD40P25942 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CD40P25942 AC002310.6-201ENST00000624451 1377 ntBASIC14.85□□□□□ -0.03
CD40P25942 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CD40P25942 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms