Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
PCNAP12004 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC16.88■□□□□ 0.29
PCNAP12004 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC16.88■□□□□ 0.29
PCNAP12004 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PCNAP12004 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
PCNAP12004 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PCNAP12004 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PCNAP12004 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.88■□□□□ 0.29
PCNAP12004 AC018695.7-201ENST00000624587 2492 ntBASIC16.88■□□□□ 0.29
PCNAP12004 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PCNAP12004 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PCNAP12004 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
PCNAP12004 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PCNAP12004 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PCNAP12004 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PCNAP12004 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PCNAP12004 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PCNAP12004 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PCNAP12004 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
PCNAP12004 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC16.87■□□□□ 0.29
PCNAP12004 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC16.87■□□□□ 0.29
PCNAP12004 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PCNAP12004 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.87■□□□□ 0.29
PCNAP12004 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
PCNAP12004 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
PCNAP12004 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
PCNAP12004 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PCNAP12004 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PCNAP12004 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PCNAP12004 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
PCNAP12004 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC16.87■□□□□ 0.29
PCNAP12004 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PCNAP12004 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
PCNAP12004 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PCNAP12004 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC16.87■□□□□ 0.29
PCNAP12004 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC16.87■□□□□ 0.29
PCNAP12004 AP000867.3-201ENST00000524675 377 ntBASIC16.87■□□□□ 0.29
PCNAP12004 AC074051.2-201ENST00000565115 352 ntBASIC16.87■□□□□ 0.29
PCNAP12004 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC16.87■□□□□ 0.29
PCNAP12004 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC16.87■□□□□ 0.29
PCNAP12004 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.87■□□□□ 0.29
PCNAP12004 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PCNAP12004 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC16.87■□□□□ 0.29
PCNAP12004 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
PCNAP12004 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PCNAP12004 NFIC-211ENST00000641145 8399 ntBASIC16.87■□□□□ 0.29
PCNAP12004 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PCNAP12004 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PCNAP12004 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
PCNAP12004 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.87■□□□□ 0.29
PCNAP12004 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PCNAP12004 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PCNAP12004 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
PCNAP12004 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PCNAP12004 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
PCNAP12004 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.86■□□□□ 0.29
PCNAP12004 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PCNAP12004 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
PCNAP12004 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.86■□□□□ 0.29
PCNAP12004 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
PCNAP12004 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PCNAP12004 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC16.86■□□□□ 0.29
PCNAP12004 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PCNAP12004 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.86■□□□□ 0.29
PCNAP12004 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
PCNAP12004 KRT17P6-201ENST00000453795 1220 ntBASIC16.86■□□□□ 0.29
PCNAP12004 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC16.86■□□□□ 0.29
PCNAP12004 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.86■□□□□ 0.29
PCNAP12004 AC122714.2-201ENST00000502787 707 ntBASIC16.86■□□□□ 0.29
PCNAP12004 AC096582.2-201ENST00000510860 516 ntBASIC16.86■□□□□ 0.29
PCNAP12004 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC16.86■□□□□ 0.29
PCNAP12004 AC111152.3-201ENST00000569699 673 ntBASIC16.86■□□□□ 0.29
PCNAP12004 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC16.86■□□□□ 0.29
PCNAP12004 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
PCNAP12004 AC019129.2-201ENST00000609837 1235 ntBASIC16.86■□□□□ 0.29
PCNAP12004 AC092119.3-201ENST00000612618 583 ntBASIC16.86■□□□□ 0.29
PCNAP12004 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PCNAP12004 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
PCNAP12004 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.86■□□□□ 0.29
PCNAP12004 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
PCNAP12004 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PCNAP12004 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC16.86■□□□□ 0.29
PCNAP12004 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC16.86■□□□□ 0.29
PCNAP12004 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PCNAP12004 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.86■□□□□ 0.29
PCNAP12004 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PCNAP12004 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
PCNAP12004 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PCNAP12004 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PCNAP12004 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.86■□□□□ 0.29
PCNAP12004 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.85■□□□□ 0.29
PCNAP12004 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PCNAP12004 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
PCNAP12004 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PCNAP12004 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PCNAP12004 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PCNAP12004 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
PCNAP12004 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PCNAP12004 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
PCNAP12004 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms