Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
COL3A1P02461 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC22.6■■□□□ 1.21
COL3A1P02461 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC22.6■■□□□ 1.21
COL3A1P02461 AL645728.2-201ENST00000641974 660 ntBASIC22.6■■□□□ 1.21
COL3A1P02461 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC22.6■■□□□ 1.21
COL3A1P02461 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC22.59■■□□□ 1.21
COL3A1P02461 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC22.59■■□□□ 1.21
COL3A1P02461 AC005332.8-201ENST00000622750 2735 ntBASIC22.59■■□□□ 1.21
COL3A1P02461 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
COL3A1P02461 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC22.59■■□□□ 1.21
COL3A1P02461 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC22.59■■□□□ 1.21
COL3A1P02461 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC22.59■■□□□ 1.21
COL3A1P02461 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
COL3A1P02461 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC22.59■■□□□ 1.21
COL3A1P02461 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
COL3A1P02461 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC22.59■■□□□ 1.21
COL3A1P02461 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC22.59■■□□□ 1.21
COL3A1P02461 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC22.59■■□□□ 1.21
COL3A1P02461 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
COL3A1P02461 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC22.59■■□□□ 1.21
COL3A1P02461 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC22.59■■□□□ 1.21
COL3A1P02461 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC22.59■■□□□ 1.21
COL3A1P02461 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC22.59■■□□□ 1.21
COL3A1P02461 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC22.59■■□□□ 1.21
COL3A1P02461 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC22.59■■□□□ 1.21
COL3A1P02461 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC22.59■■□□□ 1.21
COL3A1P02461 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
COL3A1P02461 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC22.58■■□□□ 1.21
COL3A1P02461 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.21
COL3A1P02461 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
COL3A1P02461 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC22.58■■□□□ 1.21
COL3A1P02461 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
COL3A1P02461 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
COL3A1P02461 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC22.58■■□□□ 1.21
COL3A1P02461 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC22.58■■□□□ 1.2
COL3A1P02461 HTR5BP-201ENST00000430851 1154 ntBASIC22.58■■□□□ 1.2
COL3A1P02461 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC22.58■■□□□ 1.2
COL3A1P02461 MIR4469-201ENST00000583919 79 ntBASIC22.58■■□□□ 1.2
COL3A1P02461 MIR4515-201ENST00000584082 81 ntBASIC22.58■■□□□ 1.2
COL3A1P02461 AC027612.4-201ENST00000605371 583 ntBASIC22.58■■□□□ 1.2
COL3A1P02461 AC134684.3-201ENST00000641758 218 ntBASIC22.58■■□□□ 1.2
COL3A1P02461 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC22.58■■□□□ 1.2
COL3A1P02461 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.2
COL3A1P02461 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
COL3A1P02461 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC22.58■■□□□ 1.2
COL3A1P02461 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC22.57■■□□□ 1.2
COL3A1P02461 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
COL3A1P02461 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC22.57■■□□□ 1.2
COL3A1P02461 LINC00895-201ENST00000629028 1637 ntBASIC22.57■■□□□ 1.2
COL3A1P02461 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
COL3A1P02461 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
COL3A1P02461 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC22.57■■□□□ 1.2
COL3A1P02461 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
COL3A1P02461 STOM-202ENST00000347359 870 ntTSL 2 BASIC22.57■■□□□ 1.2
COL3A1P02461 RNU1-129P-201ENST00000384064 167 ntBASIC22.57■■□□□ 1.2
COL3A1P02461 HCG4-201ENST00000418983 998 ntBASIC22.57■■□□□ 1.2
COL3A1P02461 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
COL3A1P02461 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC22.57■■□□□ 1.2
COL3A1P02461 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC22.57■■□□□ 1.2
COL3A1P02461 U1.21-201ENST00000580816 167 ntBASIC22.57■■□□□ 1.2
COL3A1P02461 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC22.57■■□□□ 1.2
COL3A1P02461 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC22.57■■□□□ 1.2
COL3A1P02461 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC22.57■■□□□ 1.2
COL3A1P02461 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
COL3A1P02461 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
COL3A1P02461 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
COL3A1P02461 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
COL3A1P02461 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC22.56■■□□□ 1.2
COL3A1P02461 AC092068.3-201ENST00000587894 2016 ntBASIC22.56■■□□□ 1.2
COL3A1P02461 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
COL3A1P02461 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
COL3A1P02461 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
COL3A1P02461 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
COL3A1P02461 SNX33P1-201ENST00000592116 1762 ntBASIC22.56■■□□□ 1.2
COL3A1P02461 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
COL3A1P02461 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
COL3A1P02461 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
COL3A1P02461 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC22.56■■□□□ 1.2
COL3A1P02461 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
COL3A1P02461 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
COL3A1P02461 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC22.56■■□□□ 1.2
COL3A1P02461 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
COL3A1P02461 AL355306.1-201ENST00000415580 579 ntBASIC22.56■■□□□ 1.2
COL3A1P02461 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
COL3A1P02461 MIR3909-201ENST00000579518 119 ntBASIC22.56■■□□□ 1.2
COL3A1P02461 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC22.56■■□□□ 1.2
COL3A1P02461 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC22.56■■□□□ 1.2
COL3A1P02461 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
COL3A1P02461 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
COL3A1P02461 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
COL3A1P02461 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC22.56■■□□□ 1.2
COL3A1P02461 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
COL3A1P02461 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
COL3A1P02461 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
COL3A1P02461 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL3A1P02461 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL3A1P02461 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL3A1P02461 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
COL3A1P02461 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
COL3A1P02461 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC22.55■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms