Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC20.6■□□□□ 0.89
COL1A1P02452 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC20.6■□□□□ 0.89
COL1A1P02452 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
COL1A1P02452 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC20.6■□□□□ 0.89
COL1A1P02452 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC20.6■□□□□ 0.89
COL1A1P02452 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC20.6■□□□□ 0.89
COL1A1P02452 AC093520.2-201ENST00000561830 333 ntBASIC20.6■□□□□ 0.89
COL1A1P02452 AC025678.2-201ENST00000562061 970 ntBASIC20.6■□□□□ 0.89
COL1A1P02452 AC004449.1-201ENST00000564240 433 ntBASIC20.6■□□□□ 0.89
COL1A1P02452 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
COL1A1P02452 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL1A1P02452 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC20.59■□□□□ 0.89
COL1A1P02452 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
COL1A1P02452 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL1A1P02452 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL1A1P02452 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL1A1P02452 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
COL1A1P02452 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.59■□□□□ 0.89
COL1A1P02452 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC20.59■□□□□ 0.89
COL1A1P02452 CROCCP2-202ENST00000412962 2773 ntBASIC20.59■□□□□ 0.89
COL1A1P02452 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC20.59■□□□□ 0.89
COL1A1P02452 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL1A1P02452 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
COL1A1P02452 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC20.59■□□□□ 0.89
COL1A1P02452 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL1A1P02452 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL1A1P02452 HMGA1P7-201ENST00000406908 502 ntBASIC20.59■□□□□ 0.89
COL1A1P02452 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
COL1A1P02452 AC109322.1-201ENST00000524499 1264 ntBASIC20.59■□□□□ 0.89
COL1A1P02452 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL1A1P02452 AC005498.2-205ENST00000593218 784 ntBASIC20.59■□□□□ 0.89
COL1A1P02452 AC239800.4-201ENST00000603712 296 ntBASIC20.59■□□□□ 0.89
COL1A1P02452 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC20.59■□□□□ 0.89
COL1A1P02452 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL1A1P02452 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL1A1P02452 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC20.59■□□□□ 0.89
COL1A1P02452 FRMD8P1-201ENST00000440433 1524 ntBASIC20.59■□□□□ 0.89
COL1A1P02452 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC20.59■□□□□ 0.89
COL1A1P02452 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC20.59■□□□□ 0.89
COL1A1P02452 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL1A1P02452 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
COL1A1P02452 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL1A1P02452 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL1A1P02452 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL1A1P02452 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
COL1A1P02452 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC20.59■□□□□ 0.89
COL1A1P02452 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC20.59■□□□□ 0.89
COL1A1P02452 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL1A1P02452 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL1A1P02452 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC20.58■□□□□ 0.89
COL1A1P02452 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL1A1P02452 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
COL1A1P02452 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
COL1A1P02452 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC20.58■□□□□ 0.89
COL1A1P02452 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL1A1P02452 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
COL1A1P02452 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL1A1P02452 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
COL1A1P02452 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL1A1P02452 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC20.58■□□□□ 0.89
COL1A1P02452 FAM86GP-201ENST00000448322 971 ntBASIC20.58■□□□□ 0.89
COL1A1P02452 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL1A1P02452 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC20.58■□□□□ 0.89
COL1A1P02452 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC20.58■□□□□ 0.89
COL1A1P02452 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL1A1P02452 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC20.58■□□□□ 0.89
COL1A1P02452 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC20.58■□□□□ 0.89
COL1A1P02452 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC20.58■□□□□ 0.89
COL1A1P02452 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC20.58■□□□□ 0.89
COL1A1P02452 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC20.58■□□□□ 0.88
COL1A1P02452 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC20.58■□□□□ 0.88
COL1A1P02452 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
COL1A1P02452 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL1A1P02452 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL1A1P02452 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC20.58■□□□□ 0.88
COL1A1P02452 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
COL1A1P02452 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL1A1P02452 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
COL1A1P02452 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC20.58■□□□□ 0.88
COL1A1P02452 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL1A1P02452 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL1A1P02452 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC20.57■□□□□ 0.88
COL1A1P02452 CD99-202ENST00000381180 530 ntTSL 2 BASIC20.57■□□□□ 0.88
COL1A1P02452 PTMS-202ENST00000389462 773 ntTSL 2 BASIC20.57■□□□□ 0.88
COL1A1P02452 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL1A1P02452 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC20.57■□□□□ 0.88
COL1A1P02452 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
COL1A1P02452 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
COL1A1P02452 AC067863.1-201ENST00000494933 530 ntBASIC20.57■□□□□ 0.88
COL1A1P02452 KRT8P48-201ENST00000515599 1220 ntBASIC20.57■□□□□ 0.88
COL1A1P02452 DAD1-205ENST00000543337 501 ntTSL 3 BASIC20.57■□□□□ 0.88
COL1A1P02452 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC20.57■□□□□ 0.88
COL1A1P02452 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
COL1A1P02452 AL645728.2-201ENST00000641974 660 ntBASIC20.57■□□□□ 0.88
COL1A1P02452 AC018470.1-201ENST00000624790 3129 ntBASIC20.57■□□□□ 0.88
COL1A1P02452 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
COL1A1P02452 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
COL1A1P02452 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL1A1P02452 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL1A1P02452 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms