Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 AP002469.2-201ENST00000531724 424 ntBASIC16.27■□□□□ 0.2
LDB3O75112 AL160237.2-201ENST00000556165 472 ntBASIC16.27■□□□□ 0.2
LDB3O75112 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
LDB3O75112 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.27■□□□□ 0.2
LDB3O75112 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC16.27■□□□□ 0.2
LDB3O75112 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16.27■□□□□ 0.2
LDB3O75112 AC148477.8-201ENST00000624298 468 ntBASIC16.27■□□□□ 0.2
LDB3O75112 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
LDB3O75112 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LDB3O75112 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LDB3O75112 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LDB3O75112 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC16.27■□□□□ 0.19
LDB3O75112 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
LDB3O75112 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.27■□□□□ 0.19
LDB3O75112 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
LDB3O75112 AC093525.9-201ENST00000624961 1746 ntBASIC16.27■□□□□ 0.19
LDB3O75112 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
LDB3O75112 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
LDB3O75112 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.27■□□□□ 0.19
LDB3O75112 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
LDB3O75112 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
LDB3O75112 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC16.27■□□□□ 0.19
LDB3O75112 AC116353.5-201ENST00000638148 1699 ntBASIC16.27■□□□□ 0.19
LDB3O75112 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
LDB3O75112 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
LDB3O75112 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
LDB3O75112 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
LDB3O75112 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
LDB3O75112 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
LDB3O75112 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LDB3O75112 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.26■□□□□ 0.19
LDB3O75112 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
LDB3O75112 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LDB3O75112 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
LDB3O75112 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.26■□□□□ 0.19
LDB3O75112 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LDB3O75112 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LDB3O75112 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LDB3O75112 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
LDB3O75112 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
LDB3O75112 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
LDB3O75112 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LDB3O75112 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC16.26■□□□□ 0.19
LDB3O75112 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
LDB3O75112 LINC00982-205ENST00000420957 435 ntBASIC16.26■□□□□ 0.19
LDB3O75112 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.26■□□□□ 0.19
LDB3O75112 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
LDB3O75112 AF186996.4-201ENST00000467186 377 ntBASIC16.26■□□□□ 0.19
LDB3O75112 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
LDB3O75112 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.26■□□□□ 0.19
LDB3O75112 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.26■□□□□ 0.19
LDB3O75112 SDCCAG3P1-201ENST00000589292 1150 ntBASIC16.26■□□□□ 0.19
LDB3O75112 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LDB3O75112 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.26■□□□□ 0.19
LDB3O75112 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LDB3O75112 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LDB3O75112 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC16.26■□□□□ 0.19
LDB3O75112 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.26■□□□□ 0.19
LDB3O75112 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LDB3O75112 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LDB3O75112 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LDB3O75112 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC16.26■□□□□ 0.19
LDB3O75112 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC16.26■□□□□ 0.19
LDB3O75112 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LDB3O75112 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LDB3O75112 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LDB3O75112 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
LDB3O75112 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LDB3O75112 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LDB3O75112 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LDB3O75112 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LDB3O75112 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
LDB3O75112 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LDB3O75112 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
LDB3O75112 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
LDB3O75112 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LDB3O75112 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LDB3O75112 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LDB3O75112 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LDB3O75112 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
LDB3O75112 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LDB3O75112 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LDB3O75112 MED22-202ENST00000371999 987 ntTSL 3 BASIC16.25■□□□□ 0.19
LDB3O75112 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
LDB3O75112 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
LDB3O75112 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.25■□□□□ 0.19
LDB3O75112 KRT18P67-201ENST00000432816 1264 ntBASIC16.25■□□□□ 0.19
LDB3O75112 HNRNPDP1-201ENST00000439535 754 ntBASIC16.25■□□□□ 0.19
LDB3O75112 AC009078.2-202ENST00000463353 338 ntBASIC16.25■□□□□ 0.19
LDB3O75112 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
LDB3O75112 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
LDB3O75112 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
LDB3O75112 LTB4R2-202ENST00000528054 3092 ntBASIC16.25■□□□□ 0.19
LDB3O75112 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LDB3O75112 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.25■□□□□ 0.19
LDB3O75112 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
LDB3O75112 NCF1C-201ENST00000438382 1427 ntBASIC16.25■□□□□ 0.19
LDB3O75112 AC020916.1-201ENST00000587762 1774 ntBASIC16.25■□□□□ 0.19
LDB3O75112 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
LDB3O75112 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms