Protein–RNA interactions for Protein: O60609

GFRA3, GDNF family receptor alpha-3, humanhuman

Predictions only

Length 400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA3O60609 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
GFRA3O60609 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
GFRA3O60609 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
GFRA3O60609 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
GFRA3O60609 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
GFRA3O60609 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
GFRA3O60609 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
GFRA3O60609 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
GFRA3O60609 MIR1247-201ENST00000408206 136 ntBASIC16.6■□□□□ 0.25
GFRA3O60609 RPL37AP1-201ENST00000412502 279 ntBASIC16.6■□□□□ 0.25
GFRA3O60609 SLC25A24P2-201ENST00000415059 510 ntBASIC16.6■□□□□ 0.25
GFRA3O60609 GPAA1P2-201ENST00000417923 928 ntBASIC16.6■□□□□ 0.25
GFRA3O60609 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC16.6■□□□□ 0.25
GFRA3O60609 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
GFRA3O60609 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC16.6■□□□□ 0.25
GFRA3O60609 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC16.6■□□□□ 0.25
GFRA3O60609 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC16.6■□□□□ 0.25
GFRA3O60609 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
GFRA3O60609 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
GFRA3O60609 AC079328.1-201ENST00000560358 952 ntBASIC16.6■□□□□ 0.25
GFRA3O60609 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC16.6■□□□□ 0.25
GFRA3O60609 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
GFRA3O60609 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC16.6■□□□□ 0.25
GFRA3O60609 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
GFRA3O60609 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC16.6■□□□□ 0.25
GFRA3O60609 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
GFRA3O60609 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
GFRA3O60609 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
GFRA3O60609 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
GFRA3O60609 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC16.59■□□□□ 0.25
GFRA3O60609 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
GFRA3O60609 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
GFRA3O60609 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
GFRA3O60609 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
GFRA3O60609 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
GFRA3O60609 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
GFRA3O60609 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.59■□□□□ 0.25
GFRA3O60609 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC16.59■□□□□ 0.25
GFRA3O60609 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
GFRA3O60609 CENPM-206ENST00000407253 818 ntTSL 2 BASIC16.59■□□□□ 0.25
GFRA3O60609 FXNP2-201ENST00000411625 547 ntBASIC16.59■□□□□ 0.25
GFRA3O60609 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC16.59■□□□□ 0.25
GFRA3O60609 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC16.59■□□□□ 0.25
GFRA3O60609 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC16.59■□□□□ 0.25
GFRA3O60609 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC16.59■□□□□ 0.25
GFRA3O60609 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC16.59■□□□□ 0.25
GFRA3O60609 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC16.59■□□□□ 0.25
GFRA3O60609 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC16.59■□□□□ 0.25
GFRA3O60609 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC16.59■□□□□ 0.25
GFRA3O60609 EMC4-209ENST00000559421 497 ntTSL 2 BASIC16.59■□□□□ 0.25
GFRA3O60609 AC015936.2-201ENST00000593177 259 ntBASIC16.59■□□□□ 0.25
GFRA3O60609 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
GFRA3O60609 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
GFRA3O60609 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
GFRA3O60609 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC16.59■□□□□ 0.25
GFRA3O60609 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC16.59■□□□□ 0.25
GFRA3O60609 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
GFRA3O60609 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
GFRA3O60609 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
GFRA3O60609 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
GFRA3O60609 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
GFRA3O60609 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
GFRA3O60609 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
GFRA3O60609 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
GFRA3O60609 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
GFRA3O60609 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC16.58■□□□□ 0.25
GFRA3O60609 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC16.58■□□□□ 0.25
GFRA3O60609 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
GFRA3O60609 AC005082.1-201ENST00000413042 2259 ntBASIC16.58■□□□□ 0.25
GFRA3O60609 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
GFRA3O60609 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
GFRA3O60609 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
GFRA3O60609 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
GFRA3O60609 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
GFRA3O60609 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC16.58■□□□□ 0.24
GFRA3O60609 RASL12-203ENST00000434605 982 ntTSL 2 BASIC16.58■□□□□ 0.24
GFRA3O60609 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC16.58■□□□□ 0.24
GFRA3O60609 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC16.58■□□□□ 0.24
GFRA3O60609 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
GFRA3O60609 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC16.58■□□□□ 0.24
GFRA3O60609 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC16.58■□□□□ 0.24
GFRA3O60609 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC16.58■□□□□ 0.24
GFRA3O60609 CTBP2P3-201ENST00000585629 1255 ntBASIC16.58■□□□□ 0.24
GFRA3O60609 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC16.58■□□□□ 0.24
GFRA3O60609 AC004790.1-201ENST00000612686 536 ntBASIC16.58■□□□□ 0.24
GFRA3O60609 WNT11-204ENST00000621122 789 ntTSL 5 BASIC16.58■□□□□ 0.24
GFRA3O60609 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC16.58■□□□□ 0.24
GFRA3O60609 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
GFRA3O60609 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
GFRA3O60609 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC16.58■□□□□ 0.24
GFRA3O60609 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC16.58■□□□□ 0.24
GFRA3O60609 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
GFRA3O60609 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
GFRA3O60609 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC16.58■□□□□ 0.24
GFRA3O60609 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
GFRA3O60609 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC16.57■□□□□ 0.24
GFRA3O60609 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
GFRA3O60609 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
GFRA3O60609 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
GFRA3O60609 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms