Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
SGCEO43556 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC15.34■□□□□ 0.05
SGCEO43556 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SGCEO43556 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SGCEO43556 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SGCEO43556 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SGCEO43556 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
SGCEO43556 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SGCEO43556 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SGCEO43556 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
SGCEO43556 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.05
SGCEO43556 TP73-AS1-210ENST00000637775 1455 ntBASIC15.33■□□□□ 0.05
SGCEO43556 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
SGCEO43556 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
SGCEO43556 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
SGCEO43556 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
SGCEO43556 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC15.33■□□□□ 0.05
SGCEO43556 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SGCEO43556 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SGCEO43556 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.04
SGCEO43556 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SGCEO43556 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
SGCEO43556 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SGCEO43556 CD9-202ENST00000382515 1229 ntTSL 5 BASIC15.33■□□□□ 0.04
SGCEO43556 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
SGCEO43556 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
SGCEO43556 CDV3-207ENST00000508481 661 ntTSL 3 BASIC15.33■□□□□ 0.04
SGCEO43556 AC096582.2-201ENST00000510860 516 ntBASIC15.33■□□□□ 0.04
SGCEO43556 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC15.33■□□□□ 0.04
SGCEO43556 AC092329.2-201ENST00000598402 547 ntBASIC15.33■□□□□ 0.04
SGCEO43556 AC092119.3-201ENST00000612618 583 ntBASIC15.33■□□□□ 0.04
SGCEO43556 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC15.33■□□□□ 0.04
SGCEO43556 BANP-227ENST00000626016 2144 ntTSL 2 BASIC15.33■□□□□ 0.04
SGCEO43556 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC15.33■□□□□ 0.04
SGCEO43556 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SGCEO43556 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC15.33■□□□□ 0.04
SGCEO43556 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SGCEO43556 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SGCEO43556 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC15.33■□□□□ 0.04
SGCEO43556 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
SGCEO43556 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SGCEO43556 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
SGCEO43556 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC15.33■□□□□ 0.04
SGCEO43556 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
SGCEO43556 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SGCEO43556 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SGCEO43556 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
SGCEO43556 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SGCEO43556 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SGCEO43556 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC15.32■□□□□ 0.04
SGCEO43556 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
SGCEO43556 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SGCEO43556 AC108860.2-201ENST00000562760 2183 ntBASIC15.32■□□□□ 0.04
SGCEO43556 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
SGCEO43556 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SGCEO43556 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
SGCEO43556 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC15.32■□□□□ 0.04
SGCEO43556 IGHV3-47-201ENST00000425060 335 ntBASIC15.32■□□□□ 0.04
SGCEO43556 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
SGCEO43556 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC15.32■□□□□ 0.04
SGCEO43556 AC012615.1-201ENST00000565797 1299 ntBASIC15.32■□□□□ 0.04
SGCEO43556 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SGCEO43556 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SGCEO43556 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC15.32■□□□□ 0.04
SGCEO43556 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
SGCEO43556 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
SGCEO43556 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SGCEO43556 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC15.32■□□□□ 0.04
SGCEO43556 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SGCEO43556 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SGCEO43556 AC016396.2-201ENST00000562575 1417 ntBASIC15.32■□□□□ 0.04
SGCEO43556 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC15.32■□□□□ 0.04
SGCEO43556 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC15.32■□□□□ 0.04
SGCEO43556 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SGCEO43556 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC15.32■□□□□ 0.04
SGCEO43556 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
SGCEO43556 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
SGCEO43556 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SGCEO43556 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC15.32■□□□□ 0.04
SGCEO43556 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
SGCEO43556 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC15.32■□□□□ 0.04
SGCEO43556 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
SGCEO43556 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
SGCEO43556 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
SGCEO43556 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SGCEO43556 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SGCEO43556 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SGCEO43556 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
SGCEO43556 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC15.31■□□□□ 0.04
SGCEO43556 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC15.31■□□□□ 0.04
SGCEO43556 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SGCEO43556 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SGCEO43556 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SGCEO43556 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SGCEO43556 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SGCEO43556 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC15.31■□□□□ 0.04
SGCEO43556 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SGCEO43556 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
SGCEO43556 CTNS-203ENST00000399306 803 ntTSL 3 BASIC15.31■□□□□ 0.04
SGCEO43556 UPK3BP1-201ENST00000428678 509 ntBASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms