Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC14.96□□□□□ -0.01
CHMP1AQ9HD42 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CHMP1AQ9HD42 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC14.96□□□□□ -0.01
CHMP1AQ9HD42 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
CHMP1AQ9HD42 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CHMP1AQ9HD42 AC024563.2-201ENST00000603282 481 ntBASIC14.96□□□□□ -0.01
CHMP1AQ9HD42 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC14.96□□□□□ -0.01
CHMP1AQ9HD42 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CHMP1AQ9HD42 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
CHMP1AQ9HD42 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC14.96□□□□□ -0.01
CHMP1AQ9HD42 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CHMP1AQ9HD42 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CHMP1AQ9HD42 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC14.96□□□□□ -0.01
CHMP1AQ9HD42 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC14.96□□□□□ -0.01
CHMP1AQ9HD42 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
CHMP1AQ9HD42 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
CHMP1AQ9HD42 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
CHMP1AQ9HD42 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
CHMP1AQ9HD42 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.02
CHMP1AQ9HD42 LINC01568-207ENST00000641790 1380 ntBASIC14.96□□□□□ -0.02
CHMP1AQ9HD42 AC106886.4-201ENST00000623557 2502 ntBASIC14.96□□□□□ -0.02
CHMP1AQ9HD42 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
CHMP1AQ9HD42 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
CHMP1AQ9HD42 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.02
CHMP1AQ9HD42 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC14.96□□□□□ -0.02
CHMP1AQ9HD42 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 ECEL1P3-201ENST00000427961 737 ntBASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 TSPY15P-201ENST00000457163 923 ntBASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 RPS20-210ENST00000523936 899 ntTSL 2 BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
CHMP1AQ9HD42 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CHMP1AQ9HD42 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CHMP1AQ9HD42 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC14.94□□□□□ -0.02
CHMP1AQ9HD42 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
CHMP1AQ9HD42 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC14.94□□□□□ -0.02
CHMP1AQ9HD42 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CHMP1AQ9HD42 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC14.94□□□□□ -0.02
CHMP1AQ9HD42 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC14.94□□□□□ -0.02
CHMP1AQ9HD42 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
CHMP1AQ9HD42 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CHMP1AQ9HD42 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
CHMP1AQ9HD42 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC14.94□□□□□ -0.02
CHMP1AQ9HD42 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC14.94□□□□□ -0.02
CHMP1AQ9HD42 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC14.94□□□□□ -0.02
CHMP1AQ9HD42 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CHMP1AQ9HD42 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CHMP1AQ9HD42 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC14.94□□□□□ -0.02
CHMP1AQ9HD42 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
CHMP1AQ9HD42 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CHMP1AQ9HD42 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CHMP1AQ9HD42 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CHMP1AQ9HD42 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CHMP1AQ9HD42 KRT18P65-201ENST00000439811 1286 ntBASIC14.94□□□□□ -0.02
CHMP1AQ9HD42 DDX43P3-201ENST00000441064 443 ntBASIC14.94□□□□□ -0.02
CHMP1AQ9HD42 AC113404.2-201ENST00000507884 177 ntBASIC14.94□□□□□ -0.02
CHMP1AQ9HD42 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC14.94□□□□□ -0.02
CHMP1AQ9HD42 AC140113.3-201ENST00000605663 199 ntBASIC14.94□□□□□ -0.02
CHMP1AQ9HD42 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
CHMP1AQ9HD42 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
CHMP1AQ9HD42 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
CHMP1AQ9HD42 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CHMP1AQ9HD42 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
CHMP1AQ9HD42 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms