Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDH9Q9HC56 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDH9Q9HC56 CCS-201ENST00000310190 942 ntTSL 5 BASIC17.88■□□□□ 0.45
PCDH9Q9HC56 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDH9Q9HC56 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC17.88■□□□□ 0.45
PCDH9Q9HC56 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PCDH9Q9HC56 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
PCDH9Q9HC56 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC17.88■□□□□ 0.45
PCDH9Q9HC56 DANCR-204ENST00000444958 709 ntTSL 3 BASIC17.88■□□□□ 0.45
PCDH9Q9HC56 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC17.88■□□□□ 0.45
PCDH9Q9HC56 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PCDH9Q9HC56 AC099336.1-202ENST00000602961 463 ntBASIC17.88■□□□□ 0.45
PCDH9Q9HC56 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC17.88■□□□□ 0.45
PCDH9Q9HC56 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
PCDH9Q9HC56 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.88■□□□□ 0.45
PCDH9Q9HC56 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDH9Q9HC56 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
PCDH9Q9HC56 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
PCDH9Q9HC56 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.88■□□□□ 0.45
PCDH9Q9HC56 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC17.88■□□□□ 0.45
PCDH9Q9HC56 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDH9Q9HC56 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
PCDH9Q9HC56 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.88■□□□□ 0.45
PCDH9Q9HC56 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
PCDH9Q9HC56 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PCDH9Q9HC56 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDH9Q9HC56 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC17.88■□□□□ 0.45
PCDH9Q9HC56 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC17.88■□□□□ 0.45
PCDH9Q9HC56 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDH9Q9HC56 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDH9Q9HC56 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDH9Q9HC56 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.87■□□□□ 0.45
PCDH9Q9HC56 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDH9Q9HC56 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
PCDH9Q9HC56 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC17.87■□□□□ 0.45
PCDH9Q9HC56 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
PCDH9Q9HC56 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDH9Q9HC56 ENSA-206ENST00000361631 725 ntTSL 2 BASIC17.87■□□□□ 0.45
PCDH9Q9HC56 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PCDH9Q9HC56 BET1L-206ENST00000486280 665 ntTSL 3 BASIC17.87■□□□□ 0.45
PCDH9Q9HC56 AC096582.2-201ENST00000510860 516 ntBASIC17.87■□□□□ 0.45
PCDH9Q9HC56 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDH9Q9HC56 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC17.87■□□□□ 0.45
PCDH9Q9HC56 MIR3652-201ENST00000579335 131 ntBASIC17.87■□□□□ 0.45
PCDH9Q9HC56 BNIP3P18-201ENST00000593976 575 ntBASIC17.87■□□□□ 0.45
PCDH9Q9HC56 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC17.87■□□□□ 0.45
PCDH9Q9HC56 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PCDH9Q9HC56 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
PCDH9Q9HC56 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC17.87■□□□□ 0.45
PCDH9Q9HC56 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDH9Q9HC56 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC17.87■□□□□ 0.45
PCDH9Q9HC56 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDH9Q9HC56 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
PCDH9Q9HC56 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDH9Q9HC56 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDH9Q9HC56 TP73-AS1-210ENST00000637775 1455 ntBASIC17.87■□□□□ 0.45
PCDH9Q9HC56 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PCDH9Q9HC56 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PCDH9Q9HC56 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDH9Q9HC56 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDH9Q9HC56 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PCDH9Q9HC56 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDH9Q9HC56 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC17.87■□□□□ 0.45
PCDH9Q9HC56 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
PCDH9Q9HC56 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDH9Q9HC56 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC17.87■□□□□ 0.45
PCDH9Q9HC56 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCDH9Q9HC56 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
PCDH9Q9HC56 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PCDH9Q9HC56 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC17.86■□□□□ 0.45
PCDH9Q9HC56 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCDH9Q9HC56 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCDH9Q9HC56 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCDH9Q9HC56 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCDH9Q9HC56 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PCDH9Q9HC56 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCDH9Q9HC56 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCDH9Q9HC56 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCDH9Q9HC56 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
PCDH9Q9HC56 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC17.86■□□□□ 0.45
PCDH9Q9HC56 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC17.86■□□□□ 0.45
PCDH9Q9HC56 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC17.86■□□□□ 0.45
PCDH9Q9HC56 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC17.86■□□□□ 0.45
PCDH9Q9HC56 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PCDH9Q9HC56 AC124947.2-201ENST00000547118 1133 ntBASIC17.86■□□□□ 0.45
PCDH9Q9HC56 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC17.86■□□□□ 0.45
PCDH9Q9HC56 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC17.86■□□□□ 0.45
PCDH9Q9HC56 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
PCDH9Q9HC56 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PCDH9Q9HC56 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.86■□□□□ 0.45
PCDH9Q9HC56 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC17.86■□□□□ 0.45
PCDH9Q9HC56 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PCDH9Q9HC56 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCDH9Q9HC56 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
PCDH9Q9HC56 AL049757.1-201ENST00000616842 1596 ntBASIC17.86■□□□□ 0.45
PCDH9Q9HC56 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PCDH9Q9HC56 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.86■□□□□ 0.45
PCDH9Q9HC56 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCDH9Q9HC56 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCDH9Q9HC56 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms