Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
UBQLN3Q9H347 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
UBQLN3Q9H347 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
UBQLN3Q9H347 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
UBQLN3Q9H347 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
UBQLN3Q9H347 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.06■□□□□ 0.16
UBQLN3Q9H347 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
UBQLN3Q9H347 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
UBQLN3Q9H347 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.05■□□□□ 0.16
UBQLN3Q9H347 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
UBQLN3Q9H347 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC16.05■□□□□ 0.16
UBQLN3Q9H347 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
UBQLN3Q9H347 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
UBQLN3Q9H347 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC16.05■□□□□ 0.16
UBQLN3Q9H347 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
UBQLN3Q9H347 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC16.05■□□□□ 0.16
UBQLN3Q9H347 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC16.05■□□□□ 0.16
UBQLN3Q9H347 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
UBQLN3Q9H347 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC16.05■□□□□ 0.16
UBQLN3Q9H347 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.05■□□□□ 0.16
UBQLN3Q9H347 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
UBQLN3Q9H347 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
UBQLN3Q9H347 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
UBQLN3Q9H347 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC16.05■□□□□ 0.16
UBQLN3Q9H347 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
UBQLN3Q9H347 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
UBQLN3Q9H347 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
UBQLN3Q9H347 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC16.05■□□□□ 0.16
UBQLN3Q9H347 PPIE-208ENST00000470213 927 ntTSL 3 BASIC16.05■□□□□ 0.16
UBQLN3Q9H347 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC16.05■□□□□ 0.16
UBQLN3Q9H347 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC16.05■□□□□ 0.16
UBQLN3Q9H347 MTDHP3-201ENST00000594186 672 ntBASIC16.05■□□□□ 0.16
UBQLN3Q9H347 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC16.05■□□□□ 0.16
UBQLN3Q9H347 AD001527.2-201ENST00000622994 785 ntBASIC16.05■□□□□ 0.16
UBQLN3Q9H347 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC16.05■□□□□ 0.16
UBQLN3Q9H347 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
UBQLN3Q9H347 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
UBQLN3Q9H347 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
UBQLN3Q9H347 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
UBQLN3Q9H347 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC16.05■□□□□ 0.16
UBQLN3Q9H347 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
UBQLN3Q9H347 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC16.05■□□□□ 0.16
UBQLN3Q9H347 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC16.05■□□□□ 0.16
UBQLN3Q9H347 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC16.05■□□□□ 0.16
UBQLN3Q9H347 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
UBQLN3Q9H347 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
UBQLN3Q9H347 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.04■□□□□ 0.16
UBQLN3Q9H347 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC16.04■□□□□ 0.16
UBQLN3Q9H347 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
UBQLN3Q9H347 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
UBQLN3Q9H347 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
UBQLN3Q9H347 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
UBQLN3Q9H347 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
UBQLN3Q9H347 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC16.04■□□□□ 0.16
UBQLN3Q9H347 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.04■□□□□ 0.16
UBQLN3Q9H347 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
UBQLN3Q9H347 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
UBQLN3Q9H347 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
UBQLN3Q9H347 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC16.04■□□□□ 0.16
UBQLN3Q9H347 MRPL3P1-201ENST00000400109 1033 ntBASIC16.04■□□□□ 0.16
UBQLN3Q9H347 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC16.04■□□□□ 0.16
UBQLN3Q9H347 AC103564.2-201ENST00000432853 1299 ntBASIC16.04■□□□□ 0.16
UBQLN3Q9H347 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC16.04■□□□□ 0.16
UBQLN3Q9H347 SRP19-202ENST00000445150 833 ntTSL 2 BASIC16.04■□□□□ 0.16
UBQLN3Q9H347 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
UBQLN3Q9H347 AL662844.1-201ENST00000546340 181 ntBASIC16.04■□□□□ 0.16
UBQLN3Q9H347 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
UBQLN3Q9H347 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC16.04■□□□□ 0.16
UBQLN3Q9H347 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC16.04■□□□□ 0.16
UBQLN3Q9H347 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.04■□□□□ 0.16
UBQLN3Q9H347 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
UBQLN3Q9H347 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
UBQLN3Q9H347 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
UBQLN3Q9H347 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC16.04■□□□□ 0.16
UBQLN3Q9H347 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
UBQLN3Q9H347 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
UBQLN3Q9H347 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
UBQLN3Q9H347 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
UBQLN3Q9H347 PMPCAP1-201ENST00000508114 1576 ntBASIC16.04■□□□□ 0.16
UBQLN3Q9H347 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
UBQLN3Q9H347 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.04■□□□□ 0.16
UBQLN3Q9H347 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
UBQLN3Q9H347 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
UBQLN3Q9H347 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBQLN3Q9H347 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBQLN3Q9H347 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBQLN3Q9H347 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBQLN3Q9H347 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.03■□□□□ 0.16
UBQLN3Q9H347 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
UBQLN3Q9H347 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
UBQLN3Q9H347 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBQLN3Q9H347 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
UBQLN3Q9H347 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBQLN3Q9H347 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
UBQLN3Q9H347 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBQLN3Q9H347 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBQLN3Q9H347 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBQLN3Q9H347 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBQLN3Q9H347 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
UBQLN3Q9H347 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms