Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC28.2■■■□□ 2.1
IFT140Q96RY7 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
IFT140Q96RY7 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
IFT140Q96RY7 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC28.2■■■□□ 2.1
IFT140Q96RY7 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC28.2■■■□□ 2.1
IFT140Q96RY7 GALT-202ENST00000450095 1280 ntTSL 2 BASIC28.2■■■□□ 2.1
IFT140Q96RY7 AC092552.1-201ENST00000547243 906 ntBASIC28.2■■■□□ 2.1
IFT140Q96RY7 AP005482.1-201ENST00000563722 1273 ntBASIC28.2■■■□□ 2.1
IFT140Q96RY7 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC28.2■■■□□ 2.1
IFT140Q96RY7 AL589739.1-201ENST00000607720 493 ntBASIC28.2■■■□□ 2.1
IFT140Q96RY7 AL133215.2-201ENST00000609242 977 ntBASIC28.2■■■□□ 2.1
IFT140Q96RY7 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC28.2■■■□□ 2.1
IFT140Q96RY7 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
IFT140Q96RY7 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC28.2■■■□□ 2.1
IFT140Q96RY7 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC28.2■■■□□ 2.1
IFT140Q96RY7 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
IFT140Q96RY7 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC28.19■■■□□ 2.1
IFT140Q96RY7 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC28.19■■■□□ 2.1
IFT140Q96RY7 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC28.19■■■□□ 2.1
IFT140Q96RY7 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
IFT140Q96RY7 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC28.19■■■□□ 2.1
IFT140Q96RY7 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC28.19■■■□□ 2.1
IFT140Q96RY7 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC28.19■■■□□ 2.1
IFT140Q96RY7 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
IFT140Q96RY7 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC28.19■■■□□ 2.1
IFT140Q96RY7 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
IFT140Q96RY7 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC28.19■■■□□ 2.1
IFT140Q96RY7 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC28.19■■■□□ 2.1
IFT140Q96RY7 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC28.19■■■□□ 2.1
IFT140Q96RY7 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
IFT140Q96RY7 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC28.18■■■□□ 2.1
IFT140Q96RY7 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
IFT140Q96RY7 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC28.18■■■□□ 2.1
IFT140Q96RY7 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
IFT140Q96RY7 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
IFT140Q96RY7 RPF1-202ENST00000370656 724 ntTSL 2 BASIC28.18■■■□□ 2.1
IFT140Q96RY7 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC28.18■■■□□ 2.1
IFT140Q96RY7 FAM8A2P-201ENST00000528813 1142 ntBASIC28.18■■■□□ 2.1
IFT140Q96RY7 AC055876.2-201ENST00000531834 546 ntBASIC28.18■■■□□ 2.1
IFT140Q96RY7 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
IFT140Q96RY7 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC28.18■■■□□ 2.1
IFT140Q96RY7 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC28.18■■■□□ 2.1
IFT140Q96RY7 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC28.18■■■□□ 2.1
IFT140Q96RY7 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC28.18■■■□□ 2.1
IFT140Q96RY7 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
IFT140Q96RY7 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC28.18■■■□□ 2.1
IFT140Q96RY7 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC28.17■■■□□ 2.1
IFT140Q96RY7 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
IFT140Q96RY7 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC28.17■■■□□ 2.1
IFT140Q96RY7 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC28.17■■■□□ 2.1
IFT140Q96RY7 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
IFT140Q96RY7 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC28.17■■■□□ 2.1
IFT140Q96RY7 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
IFT140Q96RY7 PARP8-218ENST00000513738 596 ntTSL 4 BASIC28.17■■■□□ 2.1
IFT140Q96RY7 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC28.17■■■□□ 2.1
IFT140Q96RY7 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC28.17■■■□□ 2.1
IFT140Q96RY7 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC28.17■■■□□ 2.1
IFT140Q96RY7 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC28.17■■■□□ 2.1
IFT140Q96RY7 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC28.17■■■□□ 2.1
IFT140Q96RY7 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC28.17■■■□□ 2.1
IFT140Q96RY7 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
IFT140Q96RY7 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC28.17■■■□□ 2.1
IFT140Q96RY7 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC28.17■■■□□ 2.1
IFT140Q96RY7 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC28.17■■■□□ 2.1
IFT140Q96RY7 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC28.17■■■□□ 2.1
IFT140Q96RY7 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC28.17■■■□□ 2.1
IFT140Q96RY7 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
IFT140Q96RY7 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
IFT140Q96RY7 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC28.16■■■□□ 2.1
IFT140Q96RY7 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
IFT140Q96RY7 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
IFT140Q96RY7 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC28.16■■■□□ 2.1
IFT140Q96RY7 RPL28-204ENST00000431533 590 ntTSL 2 BASIC28.16■■■□□ 2.1
IFT140Q96RY7 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC28.16■■■□□ 2.1
IFT140Q96RY7 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC28.16■■■□□ 2.1
IFT140Q96RY7 RPL28-206ENST00000558752 671 ntTSL 3 BASIC28.16■■■□□ 2.1
IFT140Q96RY7 RN7SL828P-201ENST00000607615 303 ntBASIC28.16■■■□□ 2.1
IFT140Q96RY7 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC28.16■■■□□ 2.1
IFT140Q96RY7 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC28.16■■■□□ 2.1
IFT140Q96RY7 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC28.16■■■□□ 2.1
IFT140Q96RY7 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
IFT140Q96RY7 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC28.16■■■□□ 2.1
IFT140Q96RY7 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC28.16■■■□□ 2.1
IFT140Q96RY7 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC28.16■■■□□ 2.1
IFT140Q96RY7 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
IFT140Q96RY7 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC28.16■■■□□ 2.1
IFT140Q96RY7 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC28.16■■■□□ 2.1
IFT140Q96RY7 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
IFT140Q96RY7 SPDYE19P-201ENST00000338590 713 ntBASIC28.15■■■□□ 2.1
IFT140Q96RY7 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC28.15■■■□□ 2.1
IFT140Q96RY7 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC28.15■■■□□ 2.1
IFT140Q96RY7 AC099568.2-201ENST00000609194 695 ntBASIC28.15■■■□□ 2.1
IFT140Q96RY7 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
IFT140Q96RY7 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
IFT140Q96RY7 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC28.15■■■□□ 2.1
IFT140Q96RY7 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC28.15■■■□□ 2.1
IFT140Q96RY7 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC28.15■■■□□ 2.1
IFT140Q96RY7 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
IFT140Q96RY7 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC28.15■■■□□ 2.1
IFT140Q96RY7 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC28.15■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms