Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 NUS1P2-201ENST00000417358 873 ntBASIC16.62■□□□□ 0.25
VMP1Q96GC9 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC16.62■□□□□ 0.25
VMP1Q96GC9 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC16.62■□□□□ 0.25
VMP1Q96GC9 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC16.62■□□□□ 0.25
VMP1Q96GC9 FICD-205ENST00000552758 603 ntTSL 2 BASIC16.62■□□□□ 0.25
VMP1Q96GC9 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC16.62■□□□□ 0.25
VMP1Q96GC9 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC16.62■□□□□ 0.25
VMP1Q96GC9 REXO1L9P-201ENST00000604264 2108 ntBASIC16.62■□□□□ 0.25
VMP1Q96GC9 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VMP1Q96GC9 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
VMP1Q96GC9 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VMP1Q96GC9 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VMP1Q96GC9 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
VMP1Q96GC9 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
VMP1Q96GC9 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VMP1Q96GC9 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
VMP1Q96GC9 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VMP1Q96GC9 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
VMP1Q96GC9 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VMP1Q96GC9 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VMP1Q96GC9 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VMP1Q96GC9 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VMP1Q96GC9 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VMP1Q96GC9 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VMP1Q96GC9 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VMP1Q96GC9 AC125634.1-201ENST00000438758 1403 ntBASIC16.62■□□□□ 0.25
VMP1Q96GC9 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VMP1Q96GC9 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VMP1Q96GC9 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.61■□□□□ 0.25
VMP1Q96GC9 FLJ13224-201ENST00000313737 1514 ntBASIC16.61■□□□□ 0.25
VMP1Q96GC9 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC16.61■□□□□ 0.25
VMP1Q96GC9 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.61■□□□□ 0.25
VMP1Q96GC9 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
VMP1Q96GC9 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
VMP1Q96GC9 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VMP1Q96GC9 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VMP1Q96GC9 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VMP1Q96GC9 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VMP1Q96GC9 MEG3-211ENST00000452514 461 ntTSL 3 BASIC16.61■□□□□ 0.25
VMP1Q96GC9 KRT16P4-201ENST00000453883 522 ntBASIC16.61■□□□□ 0.25
VMP1Q96GC9 KRT18P31-201ENST00000506277 1292 ntBASIC16.61■□□□□ 0.25
VMP1Q96GC9 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC16.61■□□□□ 0.25
VMP1Q96GC9 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC16.61■□□□□ 0.25
VMP1Q96GC9 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VMP1Q96GC9 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC16.61■□□□□ 0.25
VMP1Q96GC9 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC16.61■□□□□ 0.25
VMP1Q96GC9 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VMP1Q96GC9 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VMP1Q96GC9 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC16.61■□□□□ 0.25
VMP1Q96GC9 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
VMP1Q96GC9 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VMP1Q96GC9 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VMP1Q96GC9 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VMP1Q96GC9 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VMP1Q96GC9 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VMP1Q96GC9 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VMP1Q96GC9 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VMP1Q96GC9 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VMP1Q96GC9 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
VMP1Q96GC9 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.61■□□□□ 0.25
VMP1Q96GC9 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VMP1Q96GC9 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC16.61■□□□□ 0.25
VMP1Q96GC9 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VMP1Q96GC9 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VMP1Q96GC9 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VMP1Q96GC9 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VMP1Q96GC9 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VMP1Q96GC9 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
VMP1Q96GC9 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VMP1Q96GC9 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VMP1Q96GC9 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VMP1Q96GC9 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC16.6■□□□□ 0.25
VMP1Q96GC9 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
VMP1Q96GC9 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC16.6■□□□□ 0.25
VMP1Q96GC9 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VMP1Q96GC9 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC16.6■□□□□ 0.25
VMP1Q96GC9 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VMP1Q96GC9 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VMP1Q96GC9 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VMP1Q96GC9 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VMP1Q96GC9 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
VMP1Q96GC9 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.6■□□□□ 0.25
VMP1Q96GC9 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
VMP1Q96GC9 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC16.6■□□□□ 0.25
VMP1Q96GC9 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
VMP1Q96GC9 AL732292.2-201ENST00000609649 430 ntBASIC16.6■□□□□ 0.25
VMP1Q96GC9 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC16.6■□□□□ 0.25
VMP1Q96GC9 AC114341.1-201ENST00000618070 349 ntBASIC16.6■□□□□ 0.25
VMP1Q96GC9 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VMP1Q96GC9 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
VMP1Q96GC9 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.6■□□□□ 0.25
VMP1Q96GC9 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC16.6■□□□□ 0.25
VMP1Q96GC9 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.6■□□□□ 0.25
VMP1Q96GC9 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VMP1Q96GC9 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16.6■□□□□ 0.25
VMP1Q96GC9 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
VMP1Q96GC9 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.6■□□□□ 0.25
VMP1Q96GC9 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
VMP1Q96GC9 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VMP1Q96GC9 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms