Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RPUSD4Q96CM3 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 AC092850.2-201ENST00000623821 2697 ntBASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 AP005242.2-201ENST00000580065 1175 ntBASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC13.81□□□□□ -0.2
RPUSD4Q96CM3 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 UROS-202ENST00000368778 1556 ntTSL 2 BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 AP003071.4-201ENST00000562276 1284 ntBASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 CYP51A1P1-201ENST00000492267 1507 ntBASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 AL163051.1-201ENST00000569214 1512 ntBASIC13.8□□□□□ -0.2
RPUSD4Q96CM3 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
RPUSD4Q96CM3 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RPUSD4Q96CM3 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RPUSD4Q96CM3 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
RPUSD4Q96CM3 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RPUSD4Q96CM3 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms