Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLHC1Q8NHS4 LINC02012-201ENST00000608206 1725 ntBASIC16.64■□□□□ 0.25
CLHC1Q8NHS4 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.64■□□□□ 0.25
CLHC1Q8NHS4 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
CLHC1Q8NHS4 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLHC1Q8NHS4 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CLHC1Q8NHS4 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC16.64■□□□□ 0.25
CLHC1Q8NHS4 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CLHC1Q8NHS4 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 DAP-202ENST00000432074 1048 ntTSL 2 BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 AC091607.1-201ENST00000490318 1060 ntBASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 LTBR-211ENST00000543190 785 ntTSL 3 BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 AC011840.4-201ENST00000578471 627 ntBASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CLHC1Q8NHS4 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 FLJ38576-201ENST00000623820 2459 ntBASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 AC105020.1-201ENST00000435356 2205 ntBASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 PCDHA14-201ENST00000506751 2298 ntBASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 FXN-203ENST00000396366 922 ntTSL 2 BASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 AL136038.3-201ENST00000561909 1096 ntBASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 AC090616.6-201ENST00000582640 721 ntBASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 KRT8P10-201ENST00000450021 1447 ntBASIC16.62■□□□□ 0.25
CLHC1Q8NHS4 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
CLHC1Q8NHS4 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLHC1Q8NHS4 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLHC1Q8NHS4 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLHC1Q8NHS4 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLHC1Q8NHS4 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLHC1Q8NHS4 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLHC1Q8NHS4 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLHC1Q8NHS4 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLHC1Q8NHS4 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
CLHC1Q8NHS4 AL049757.1-201ENST00000616842 1596 ntBASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms