Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC60Q8IWA6 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC19.15■□□□□ 0.66
CCDC60Q8IWA6 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC19.15■□□□□ 0.66
CCDC60Q8IWA6 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.15■□□□□ 0.66
CCDC60Q8IWA6 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC19.15■□□□□ 0.66
CCDC60Q8IWA6 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC19.15■□□□□ 0.66
CCDC60Q8IWA6 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC60Q8IWA6 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC60Q8IWA6 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC19.15■□□□□ 0.66
CCDC60Q8IWA6 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC19.15■□□□□ 0.66
CCDC60Q8IWA6 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC19.14■□□□□ 0.66
CCDC60Q8IWA6 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
CCDC60Q8IWA6 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CCDC60Q8IWA6 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CCDC60Q8IWA6 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CCDC60Q8IWA6 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.66
CCDC60Q8IWA6 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
CCDC60Q8IWA6 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC60Q8IWA6 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC60Q8IWA6 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
CCDC60Q8IWA6 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC60Q8IWA6 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
CCDC60Q8IWA6 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC60Q8IWA6 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC60Q8IWA6 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
CCDC60Q8IWA6 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC60Q8IWA6 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC60Q8IWA6 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC60Q8IWA6 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC60Q8IWA6 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC19.14■□□□□ 0.65
CCDC60Q8IWA6 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC19.14■□□□□ 0.65
CCDC60Q8IWA6 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC19.14■□□□□ 0.65
CCDC60Q8IWA6 CXCL1P1-201ENST00000502804 216 ntBASIC19.14■□□□□ 0.65
CCDC60Q8IWA6 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC19.14■□□□□ 0.65
CCDC60Q8IWA6 MTDHP5-201ENST00000598980 586 ntBASIC19.14■□□□□ 0.65
CCDC60Q8IWA6 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC19.14■□□□□ 0.65
CCDC60Q8IWA6 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC19.14■□□□□ 0.65
CCDC60Q8IWA6 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC60Q8IWA6 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
CCDC60Q8IWA6 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC60Q8IWA6 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC60Q8IWA6 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.14■□□□□ 0.65
CCDC60Q8IWA6 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC60Q8IWA6 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC60Q8IWA6 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC19.14■□□□□ 0.65
CCDC60Q8IWA6 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC60Q8IWA6 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC60Q8IWA6 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
CCDC60Q8IWA6 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
CCDC60Q8IWA6 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
CCDC60Q8IWA6 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC60Q8IWA6 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC19.13■□□□□ 0.65
CCDC60Q8IWA6 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC19.13■□□□□ 0.65
CCDC60Q8IWA6 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC19.13■□□□□ 0.65
CCDC60Q8IWA6 KRT19P2-202ENST00000557173 1012 ntBASIC19.13■□□□□ 0.65
CCDC60Q8IWA6 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC60Q8IWA6 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC19.13■□□□□ 0.65
CCDC60Q8IWA6 ACTL9-202ENST00000612068 1252 ntBASIC19.13■□□□□ 0.65
CCDC60Q8IWA6 BCAR1-209ENST00000546196 1340 ntBASIC19.13■□□□□ 0.65
CCDC60Q8IWA6 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC60Q8IWA6 AC016396.2-201ENST00000562575 1417 ntBASIC19.13■□□□□ 0.65
CCDC60Q8IWA6 CYP51A1P2-201ENST00000419457 1499 ntBASIC19.13■□□□□ 0.65
CCDC60Q8IWA6 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC60Q8IWA6 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
CCDC60Q8IWA6 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
CCDC60Q8IWA6 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC60Q8IWA6 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC60Q8IWA6 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC19.13■□□□□ 0.65
CCDC60Q8IWA6 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
CCDC60Q8IWA6 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC60Q8IWA6 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC60Q8IWA6 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC60Q8IWA6 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC60Q8IWA6 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC60Q8IWA6 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC60Q8IWA6 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC19.12■□□□□ 0.65
CCDC60Q8IWA6 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC19.12■□□□□ 0.65
CCDC60Q8IWA6 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
CCDC60Q8IWA6 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC60Q8IWA6 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC60Q8IWA6 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC60Q8IWA6 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC60Q8IWA6 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC60Q8IWA6 AC093525.9-201ENST00000624961 1746 ntBASIC19.12■□□□□ 0.65
CCDC60Q8IWA6 EGFEM1P-202ENST00000431685 1563 ntBASIC19.12■□□□□ 0.65
CCDC60Q8IWA6 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC60Q8IWA6 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC19.12■□□□□ 0.65
CCDC60Q8IWA6 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC19.12■□□□□ 0.65
CCDC60Q8IWA6 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC19.12■□□□□ 0.65
CCDC60Q8IWA6 FAM185BP-201ENST00000443595 716 ntBASIC19.12■□□□□ 0.65
CCDC60Q8IWA6 ALG1L5P-201ENST00000482043 771 ntBASIC19.12■□□□□ 0.65
CCDC60Q8IWA6 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC19.12■□□□□ 0.65
CCDC60Q8IWA6 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
CCDC60Q8IWA6 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC19.12■□□□□ 0.65
CCDC60Q8IWA6 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC19.12■□□□□ 0.65
CCDC60Q8IWA6 PDPK2P-202ENST00000562415 1191 ntBASIC19.12■□□□□ 0.65
CCDC60Q8IWA6 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
CCDC60Q8IWA6 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC60Q8IWA6 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC60Q8IWA6 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms