Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 AL671277.2-201ENST00000458060 996 ntBASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 CD320-202ENST00000537716 1119 ntTSL 2 BASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PPP4R4Q6NUP7 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PPP4R4Q6NUP7 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
PPP4R4Q6NUP7 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
PPP4R4Q6NUP7 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.61■□□□□ 0.25
PPP4R4Q6NUP7 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PPP4R4Q6NUP7 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
PPP4R4Q6NUP7 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PPP4R4Q6NUP7 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PPP4R4Q6NUP7 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PPP4R4Q6NUP7 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
PPP4R4Q6NUP7 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PPP4R4Q6NUP7 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
PPP4R4Q6NUP7 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
PPP4R4Q6NUP7 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
PPP4R4Q6NUP7 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC16.61■□□□□ 0.25
PPP4R4Q6NUP7 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PPP4R4Q6NUP7 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PPP4R4Q6NUP7 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PPP4R4Q6NUP7 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC16.61■□□□□ 0.25
PPP4R4Q6NUP7 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PPP4R4Q6NUP7 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC16.61■□□□□ 0.25
PPP4R4Q6NUP7 SPDYE15P-201ENST00000424157 909 ntBASIC16.61■□□□□ 0.25
PPP4R4Q6NUP7 KRT18P38-201ENST00000449496 1282 ntBASIC16.61■□□□□ 0.25
PPP4R4Q6NUP7 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC16.61■□□□□ 0.25
PPP4R4Q6NUP7 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC16.61■□□□□ 0.25
PPP4R4Q6NUP7 PCDHB17P-201ENST00000539533 2393 ntBASIC16.61■□□□□ 0.25
PPP4R4Q6NUP7 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PPP4R4Q6NUP7 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PPP4R4Q6NUP7 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
PPP4R4Q6NUP7 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PPP4R4Q6NUP7 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
PPP4R4Q6NUP7 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
PPP4R4Q6NUP7 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PPP4R4Q6NUP7 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PPP4R4Q6NUP7 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PPP4R4Q6NUP7 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PPP4R4Q6NUP7 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PPP4R4Q6NUP7 REXO1L11P-201ENST00000620964 1927 ntBASIC16.6■□□□□ 0.25
PPP4R4Q6NUP7 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16.6■□□□□ 0.25
PPP4R4Q6NUP7 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC16.6■□□□□ 0.25
PPP4R4Q6NUP7 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PPP4R4Q6NUP7 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.6■□□□□ 0.25
PPP4R4Q6NUP7 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PPP4R4Q6NUP7 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC16.6■□□□□ 0.25
PPP4R4Q6NUP7 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC16.6■□□□□ 0.25
PPP4R4Q6NUP7 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PPP4R4Q6NUP7 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PPP4R4Q6NUP7 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
PPP4R4Q6NUP7 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PPP4R4Q6NUP7 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC16.6■□□□□ 0.25
PPP4R4Q6NUP7 GUK1-204ENST00000366721 689 ntTSL 3 BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms