Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
COL28A1Q2UY09 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC16.63■□□□□ 0.25
COL28A1Q2UY09 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC16.63■□□□□ 0.25
COL28A1Q2UY09 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.63■□□□□ 0.25
COL28A1Q2UY09 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL28A1Q2UY09 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL28A1Q2UY09 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL28A1Q2UY09 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
COL28A1Q2UY09 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL28A1Q2UY09 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC16.63■□□□□ 0.25
COL28A1Q2UY09 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
COL28A1Q2UY09 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL28A1Q2UY09 AC009154.2-201ENST00000621177 724 ntBASIC16.63■□□□□ 0.25
COL28A1Q2UY09 BICD1-207ENST00000551848 1962 ntBASIC16.63■□□□□ 0.25
COL28A1Q2UY09 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL28A1Q2UY09 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC16.63■□□□□ 0.25
COL28A1Q2UY09 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
COL28A1Q2UY09 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL28A1Q2UY09 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL28A1Q2UY09 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL28A1Q2UY09 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL28A1Q2UY09 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL28A1Q2UY09 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
COL28A1Q2UY09 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL28A1Q2UY09 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL28A1Q2UY09 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
COL28A1Q2UY09 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL28A1Q2UY09 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 PHGDH-209ENST00000641074 1780 ntBASIC16.62■□□□□ 0.25
COL28A1Q2UY09 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 OR8S1-201ENST00000310194 1080 ntBASIC16.62■□□□□ 0.25
COL28A1Q2UY09 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 ACTG1P14-201ENST00000446382 1122 ntBASIC16.62■□□□□ 0.25
COL28A1Q2UY09 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 AC108073.2-201ENST00000464002 357 ntBASIC16.62■□□□□ 0.25
COL28A1Q2UY09 OARD1-208ENST00000469104 704 ntTSL 2 BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 PDPK2P-202ENST00000562415 1191 ntBASIC16.62■□□□□ 0.25
COL28A1Q2UY09 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 AC106820.2-201ENST00000563775 3264 ntBASIC16.62■□□□□ 0.25
COL28A1Q2UY09 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL28A1Q2UY09 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC16.61■□□□□ 0.25
COL28A1Q2UY09 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC16.61■□□□□ 0.25
COL28A1Q2UY09 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL28A1Q2UY09 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC16.61■□□□□ 0.25
COL28A1Q2UY09 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
COL28A1Q2UY09 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC16.61■□□□□ 0.25
COL28A1Q2UY09 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL28A1Q2UY09 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL28A1Q2UY09 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
COL28A1Q2UY09 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
COL28A1Q2UY09 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.61■□□□□ 0.25
COL28A1Q2UY09 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL28A1Q2UY09 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL28A1Q2UY09 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
COL28A1Q2UY09 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL28A1Q2UY09 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL28A1Q2UY09 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
COL28A1Q2UY09 DDT-204ENST00000404092 805 ntTSL 3 BASIC16.61■□□□□ 0.25
COL28A1Q2UY09 AC002472.2-201ENST00000442739 958 ntBASIC16.61■□□□□ 0.25
COL28A1Q2UY09 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL28A1Q2UY09 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
COL28A1Q2UY09 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC16.61■□□□□ 0.25
COL28A1Q2UY09 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC16.61■□□□□ 0.25
COL28A1Q2UY09 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC16.61■□□□□ 0.25
COL28A1Q2UY09 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC16.61■□□□□ 0.25
COL28A1Q2UY09 CECR7-204ENST00000609932 568 ntTSL 2 BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms