Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIM2P55344 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
LIM2P55344 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIM2P55344 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
LIM2P55344 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LIM2P55344 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.42■□□□□ 0.22
LIM2P55344 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC16.42■□□□□ 0.22
LIM2P55344 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.42■□□□□ 0.22
LIM2P55344 PRYP5-201ENST00000451909 266 ntBASIC16.42■□□□□ 0.22
LIM2P55344 SCARNA2-201ENST00000458748 420 ntBASIC16.42■□□□□ 0.22
LIM2P55344 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
LIM2P55344 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC16.42■□□□□ 0.22
LIM2P55344 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
LIM2P55344 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC16.42■□□□□ 0.22
LIM2P55344 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC16.42■□□□□ 0.22
LIM2P55344 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC16.42■□□□□ 0.22
LIM2P55344 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC16.42■□□□□ 0.22
LIM2P55344 CYB561-217ENST00000582997 877 ntTSL 5 BASIC16.42■□□□□ 0.22
LIM2P55344 AL022326.1-202ENST00000641533 845 ntBASIC16.42■□□□□ 0.22
LIM2P55344 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIM2P55344 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
LIM2P55344 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIM2P55344 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LIM2P55344 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIM2P55344 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
LIM2P55344 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LIM2P55344 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
LIM2P55344 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIM2P55344 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIM2P55344 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.42■□□□□ 0.22
LIM2P55344 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIM2P55344 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIM2P55344 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LIM2P55344 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LIM2P55344 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIM2P55344 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.41■□□□□ 0.22
LIM2P55344 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIM2P55344 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIM2P55344 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
LIM2P55344 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.41■□□□□ 0.22
LIM2P55344 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.41■□□□□ 0.22
LIM2P55344 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIM2P55344 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.41■□□□□ 0.22
LIM2P55344 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIM2P55344 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIM2P55344 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
LIM2P55344 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC16.41■□□□□ 0.22
LIM2P55344 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIM2P55344 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIM2P55344 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LIM2P55344 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIM2P55344 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
LIM2P55344 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC16.41■□□□□ 0.22
LIM2P55344 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
LIM2P55344 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.41■□□□□ 0.22
LIM2P55344 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.41■□□□□ 0.22
LIM2P55344 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.41■□□□□ 0.22
LIM2P55344 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC16.41■□□□□ 0.22
LIM2P55344 AL121912.1-201ENST00000603683 238 ntBASIC16.41■□□□□ 0.22
LIM2P55344 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.41■□□□□ 0.22
LIM2P55344 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
LIM2P55344 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
LIM2P55344 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LIM2P55344 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIM2P55344 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
LIM2P55344 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIM2P55344 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIM2P55344 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
LIM2P55344 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
LIM2P55344 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LIM2P55344 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
LIM2P55344 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIM2P55344 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
LIM2P55344 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC16.41■□□□□ 0.22
LIM2P55344 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIM2P55344 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIM2P55344 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
LIM2P55344 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
LIM2P55344 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LIM2P55344 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.4■□□□□ 0.22
LIM2P55344 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIM2P55344 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIM2P55344 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
LIM2P55344 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LIM2P55344 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
LIM2P55344 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIM2P55344 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIM2P55344 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIM2P55344 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC16.4■□□□□ 0.22
LIM2P55344 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIM2P55344 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LIM2P55344 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LIM2P55344 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LIM2P55344 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIM2P55344 HIST2H3DP1-201ENST00000401004 416 ntBASIC16.4■□□□□ 0.22
LIM2P55344 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIM2P55344 FAAHP1-202ENST00000446499 1238 ntBASIC16.4■□□□□ 0.22
LIM2P55344 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC16.4■□□□□ 0.22
LIM2P55344 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC16.4■□□□□ 0.22
LIM2P55344 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms