Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC16.8■□□□□ 0.28
HNF4AP41235 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
HNF4AP41235 FUOM-202ENST00000368551 628 ntTSL 3 BASIC16.8■□□□□ 0.28
HNF4AP41235 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
HNF4AP41235 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HNF4AP41235 STK19B-204ENST00000512515 211 ntBASIC16.8■□□□□ 0.28
HNF4AP41235 AC114341.1-201ENST00000618070 349 ntBASIC16.8■□□□□ 0.28
HNF4AP41235 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HNF4AP41235 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HNF4AP41235 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.8■□□□□ 0.28
HNF4AP41235 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HNF4AP41235 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.8■□□□□ 0.28
HNF4AP41235 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HNF4AP41235 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HNF4AP41235 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
HNF4AP41235 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HNF4AP41235 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HNF4AP41235 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
HNF4AP41235 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
HNF4AP41235 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HNF4AP41235 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
HNF4AP41235 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HNF4AP41235 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HNF4AP41235 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.79■□□□□ 0.28
HNF4AP41235 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC16.79■□□□□ 0.28
HNF4AP41235 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC16.79■□□□□ 0.28
HNF4AP41235 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HNF4AP41235 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC16.79■□□□□ 0.28
HNF4AP41235 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HNF4AP41235 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
HNF4AP41235 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HNF4AP41235 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC16.79■□□□□ 0.28
HNF4AP41235 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC16.79■□□□□ 0.28
HNF4AP41235 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC16.79■□□□□ 0.28
HNF4AP41235 SKP2-204ENST00000508514 821 ntTSL 3 BASIC16.79■□□□□ 0.28
HNF4AP41235 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HNF4AP41235 FICD-205ENST00000552758 603 ntTSL 2 BASIC16.79■□□□□ 0.28
HNF4AP41235 MIR5100-201ENST00000579544 119 ntBASIC16.79■□□□□ 0.28
HNF4AP41235 AL591684.3-201ENST00000605187 298 ntBASIC16.79■□□□□ 0.28
HNF4AP41235 AL732292.2-201ENST00000609649 430 ntBASIC16.79■□□□□ 0.28
HNF4AP41235 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HNF4AP41235 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HNF4AP41235 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.79■□□□□ 0.28
HNF4AP41235 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC16.79■□□□□ 0.28
HNF4AP41235 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HNF4AP41235 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC16.79■□□□□ 0.28
HNF4AP41235 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HNF4AP41235 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HNF4AP41235 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.79■□□□□ 0.28
HNF4AP41235 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HNF4AP41235 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.79■□□□□ 0.28
HNF4AP41235 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC16.79■□□□□ 0.28
HNF4AP41235 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HNF4AP41235 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HNF4AP41235 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC16.78■□□□□ 0.28
HNF4AP41235 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HNF4AP41235 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
HNF4AP41235 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC16.78■□□□□ 0.28
HNF4AP41235 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HNF4AP41235 AL121761.2-201ENST00000598007 1648 ntBASIC16.78■□□□□ 0.28
HNF4AP41235 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.78■□□□□ 0.28
HNF4AP41235 AC009336.1-201ENST00000608941 1553 ntBASIC16.78■□□□□ 0.28
HNF4AP41235 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
HNF4AP41235 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HNF4AP41235 IPPK-202ENST00000375522 882 ntTSL 3 BASIC16.78■□□□□ 0.28
HNF4AP41235 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC16.78■□□□□ 0.28
HNF4AP41235 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC16.78■□□□□ 0.28
HNF4AP41235 NUS1P1-201ENST00000446295 882 ntBASIC16.78■□□□□ 0.28
HNF4AP41235 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC16.78■□□□□ 0.28
HNF4AP41235 COX5A-204ENST00000567270 579 ntTSL 3 BASIC16.78■□□□□ 0.28
HNF4AP41235 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC16.78■□□□□ 0.28
HNF4AP41235 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC16.78■□□□□ 0.28
HNF4AP41235 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC16.78■□□□□ 0.28
HNF4AP41235 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HNF4AP41235 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HNF4AP41235 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HNF4AP41235 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HNF4AP41235 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC16.78■□□□□ 0.28
HNF4AP41235 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HNF4AP41235 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HNF4AP41235 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.78■□□□□ 0.28
HNF4AP41235 AC093525.9-201ENST00000624961 1746 ntBASIC16.78■□□□□ 0.28
HNF4AP41235 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.78■□□□□ 0.28
HNF4AP41235 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
HNF4AP41235 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
HNF4AP41235 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC16.78■□□□□ 0.28
HNF4AP41235 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
HNF4AP41235 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HNF4AP41235 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HNF4AP41235 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HNF4AP41235 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HNF4AP41235 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HNF4AP41235 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
HNF4AP41235 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HNF4AP41235 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
HNF4AP41235 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
HNF4AP41235 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC16.77■□□□□ 0.28
HNF4AP41235 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HNF4AP41235 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HNF4AP41235 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms