Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
RPA3P35244 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC17.52■□□□□ 0.4
RPA3P35244 RNF146-204ENST00000476956 884 ntTSL 2 BASIC17.52■□□□□ 0.4
RPA3P35244 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC17.52■□□□□ 0.4
RPA3P35244 FAM86EP-206ENST00000510506 987 ntBASIC17.52■□□□□ 0.4
RPA3P35244 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
RPA3P35244 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC17.52■□□□□ 0.4
RPA3P35244 NDUFV2-AS1-203ENST00000608008 779 ntBASIC17.52■□□□□ 0.4
RPA3P35244 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
RPA3P35244 AC004263.2-201ENST00000617183 678 ntBASIC17.52■□□□□ 0.4
RPA3P35244 WDR6-223ENST00000627177 207 ntTSL 2 BASIC17.52■□□□□ 0.4
RPA3P35244 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC17.52■□□□□ 0.4
RPA3P35244 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
RPA3P35244 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RPA3P35244 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RPA3P35244 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
RPA3P35244 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
RPA3P35244 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RPA3P35244 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RPA3P35244 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
RPA3P35244 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC17.52■□□□□ 0.39
RPA3P35244 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC17.52■□□□□ 0.39
RPA3P35244 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.52■□□□□ 0.39
RPA3P35244 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
RPA3P35244 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
RPA3P35244 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
RPA3P35244 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
RPA3P35244 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
RPA3P35244 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
RPA3P35244 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
RPA3P35244 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RPA3P35244 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
RPA3P35244 AGK-211ENST00000629555 2765 ntTSL 5 BASIC17.51■□□□□ 0.39
RPA3P35244 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
RPA3P35244 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
RPA3P35244 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
RPA3P35244 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC17.51■□□□□ 0.39
RPA3P35244 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RPA3P35244 AC005332.1-201ENST00000577698 1310 ntBASIC17.51■□□□□ 0.39
RPA3P35244 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.51■□□□□ 0.39
RPA3P35244 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RPA3P35244 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.51■□□□□ 0.39
RPA3P35244 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RPA3P35244 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
RPA3P35244 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
RPA3P35244 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
RPA3P35244 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
RPA3P35244 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
RPA3P35244 SLC25A1P3-201ENST00000395415 828 ntBASIC17.51■□□□□ 0.39
RPA3P35244 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.51■□□□□ 0.39
RPA3P35244 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC17.51■□□□□ 0.39
RPA3P35244 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC17.51■□□□□ 0.39
RPA3P35244 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC17.51■□□□□ 0.39
RPA3P35244 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC17.51■□□□□ 0.39
RPA3P35244 AC005332.3-201ENST00000589904 676 ntBASIC17.51■□□□□ 0.39
RPA3P35244 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
RPA3P35244 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
RPA3P35244 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RPA3P35244 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RPA3P35244 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
RPA3P35244 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
RPA3P35244 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RPA3P35244 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC17.51■□□□□ 0.39
RPA3P35244 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC17.51■□□□□ 0.39
RPA3P35244 AC078925.2-201ENST00000624013 1973 ntBASIC17.51■□□□□ 0.39
RPA3P35244 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
RPA3P35244 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
RPA3P35244 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
RPA3P35244 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
RPA3P35244 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RPA3P35244 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
RPA3P35244 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RPA3P35244 Z83836.1-201ENST00000624605 1642 ntBASIC17.5■□□□□ 0.39
RPA3P35244 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RPA3P35244 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RPA3P35244 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
RPA3P35244 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
RPA3P35244 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
RPA3P35244 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
RPA3P35244 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RPA3P35244 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RPA3P35244 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RPA3P35244 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC17.5■□□□□ 0.39
RPA3P35244 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
RPA3P35244 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC17.5■□□□□ 0.39
RPA3P35244 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
RPA3P35244 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RPA3P35244 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
RPA3P35244 BAALC-202ENST00000306391 243 ntTSL 5 BASIC17.5■□□□□ 0.39
RPA3P35244 BAALC-204ENST00000330955 222 ntTSL 5 BASIC17.5■□□□□ 0.39
RPA3P35244 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
RPA3P35244 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
RPA3P35244 PCED1CP-201ENST00000419887 785 ntBASIC17.5■□□□□ 0.39
RPA3P35244 ISCU-203ENST00000431221 799 ntTSL 2 BASIC17.5■□□□□ 0.39
RPA3P35244 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
RPA3P35244 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC17.5■□□□□ 0.39
RPA3P35244 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC17.5■□□□□ 0.39
RPA3P35244 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC17.5■□□□□ 0.39
RPA3P35244 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC17.5■□□□□ 0.39
RPA3P35244 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms