Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
COL4A5P29400 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC20.49■□□□□ 0.87
COL4A5P29400 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL4A5P29400 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
COL4A5P29400 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL4A5P29400 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL4A5P29400 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
COL4A5P29400 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC20.49■□□□□ 0.87
COL4A5P29400 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL4A5P29400 AL844908.2-201ENST00000609461 460 ntBASIC20.49■□□□□ 0.87
COL4A5P29400 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL4A5P29400 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC20.49■□□□□ 0.87
COL4A5P29400 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL4A5P29400 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL4A5P29400 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL4A5P29400 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL4A5P29400 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL4A5P29400 HARS-204ENST00000438307 1789 ntTSL 2 BASIC20.49■□□□□ 0.87
COL4A5P29400 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL4A5P29400 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL4A5P29400 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL4A5P29400 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL4A5P29400 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC20.49■□□□□ 0.87
COL4A5P29400 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
COL4A5P29400 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC20.49■□□□□ 0.87
COL4A5P29400 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A5P29400 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
COL4A5P29400 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC20.48■□□□□ 0.87
COL4A5P29400 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC20.48■□□□□ 0.87
COL4A5P29400 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A5P29400 HCG4-201ENST00000418983 998 ntBASIC20.48■□□□□ 0.87
COL4A5P29400 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A5P29400 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A5P29400 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC20.48■□□□□ 0.87
COL4A5P29400 HILS1-202ENST00000545329 423 ntBASIC20.48■□□□□ 0.87
COL4A5P29400 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC20.48■□□□□ 0.87
COL4A5P29400 RARRES2P9-201ENST00000565168 469 ntBASIC20.48■□□□□ 0.87
COL4A5P29400 AC007967.4-201ENST00000614700 386 ntBASIC20.48■□□□□ 0.87
COL4A5P29400 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
COL4A5P29400 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC20.48■□□□□ 0.87
COL4A5P29400 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A5P29400 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC20.48■□□□□ 0.87
COL4A5P29400 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC20.48■□□□□ 0.87
COL4A5P29400 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
COL4A5P29400 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A5P29400 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A5P29400 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
COL4A5P29400 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A5P29400 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A5P29400 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A5P29400 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A5P29400 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC20.48■□□□□ 0.87
COL4A5P29400 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A5P29400 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A5P29400 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A5P29400 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A5P29400 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
COL4A5P29400 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A5P29400 HNRNPA3P1-201ENST00000401429 1139 ntBASIC20.48■□□□□ 0.87
COL4A5P29400 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC20.48■□□□□ 0.87
COL4A5P29400 HNRNPA3P5-201ENST00000455201 833 ntBASIC20.48■□□□□ 0.87
COL4A5P29400 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC20.48■□□□□ 0.87
COL4A5P29400 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC20.48■□□□□ 0.87
COL4A5P29400 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A5P29400 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A5P29400 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A5P29400 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A5P29400 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
COL4A5P29400 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A5P29400 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A5P29400 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC20.47■□□□□ 0.87
COL4A5P29400 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A5P29400 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A5P29400 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
COL4A5P29400 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A5P29400 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A5P29400 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC20.47■□□□□ 0.87
COL4A5P29400 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC20.47■□□□□ 0.87
COL4A5P29400 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC20.47■□□□□ 0.87
COL4A5P29400 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC20.47■□□□□ 0.87
COL4A5P29400 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC20.47■□□□□ 0.87
COL4A5P29400 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC20.47■□□□□ 0.87
COL4A5P29400 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A5P29400 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A5P29400 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A5P29400 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC20.47■□□□□ 0.87
COL4A5P29400 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
COL4A5P29400 WASH4P-201ENST00000564273 1246 ntBASIC20.47■□□□□ 0.87
COL4A5P29400 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC20.47■□□□□ 0.87
COL4A5P29400 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC20.47■□□□□ 0.87
COL4A5P29400 AC027307.3-201ENST00000594262 1100 ntBASIC20.47■□□□□ 0.87
COL4A5P29400 AL132655.2-201ENST00000596276 594 ntBASIC20.47■□□□□ 0.87
COL4A5P29400 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC20.47■□□□□ 0.87
COL4A5P29400 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A5P29400 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC20.47■□□□□ 0.87
COL4A5P29400 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
COL4A5P29400 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC20.47■□□□□ 0.87
COL4A5P29400 CU639417.3-201ENST00000624240 1404 ntBASIC20.47■□□□□ 0.87
COL4A5P29400 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A5P29400 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms