Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 HNRNPA3P5-201ENST00000455201 833 ntBASIC17.68■□□□□ 0.42
VCANP13611 AGER-214ENST00000538695 487 ntTSL 2 BASIC17.68■□□□□ 0.42
VCANP13611 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC17.68■□□□□ 0.42
VCANP13611 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VCANP13611 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VCANP13611 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VCANP13611 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.68■□□□□ 0.42
VCANP13611 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
VCANP13611 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC17.68■□□□□ 0.42
VCANP13611 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VCANP13611 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VCANP13611 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC17.68■□□□□ 0.42
VCANP13611 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
VCANP13611 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
VCANP13611 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VCANP13611 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VCANP13611 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC17.68■□□□□ 0.42
VCANP13611 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VCANP13611 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VCANP13611 SATB1-217ENST00000493952 626 ntTSL 3 BASIC17.68■□□□□ 0.42
VCANP13611 AC108725.1-201ENST00000495472 409 ntBASIC17.68■□□□□ 0.42
VCANP13611 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VCANP13611 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
VCANP13611 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC17.67■□□□□ 0.42
VCANP13611 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC17.67■□□□□ 0.42
VCANP13611 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC17.67■□□□□ 0.42
VCANP13611 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC17.67■□□□□ 0.42
VCANP13611 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
VCANP13611 AC009949.1-201ENST00000623048 1830 ntBASIC17.67■□□□□ 0.42
VCANP13611 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
VCANP13611 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
VCANP13611 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC17.67■□□□□ 0.42
VCANP13611 AC106872.11-201ENST00000605838 421 ntBASIC17.67■□□□□ 0.42
VCANP13611 AC015967.2-201ENST00000624092 234 ntBASIC17.67■□□□□ 0.42
VCANP13611 AC006435.4-201ENST00000625037 234 ntBASIC17.67■□□□□ 0.42
VCANP13611 AL356737.1-201ENST00000634391 234 ntBASIC17.67■□□□□ 0.42
VCANP13611 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VCANP13611 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VCANP13611 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC17.67■□□□□ 0.42
VCANP13611 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VCANP13611 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
VCANP13611 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.67■□□□□ 0.42
VCANP13611 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
VCANP13611 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
VCANP13611 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VCANP13611 KRT8P19-201ENST00000551916 1455 ntBASIC17.67■□□□□ 0.42
VCANP13611 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.67■□□□□ 0.42
VCANP13611 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC17.67■□□□□ 0.42
VCANP13611 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC17.67■□□□□ 0.42
VCANP13611 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC17.67■□□□□ 0.42
VCANP13611 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC17.67■□□□□ 0.42
VCANP13611 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.67■□□□□ 0.42
VCANP13611 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.67■□□□□ 0.42
VCANP13611 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VCANP13611 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VCANP13611 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.67■□□□□ 0.42
VCANP13611 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC17.67■□□□□ 0.42
VCANP13611 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VCANP13611 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC17.67■□□□□ 0.42
VCANP13611 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VCANP13611 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC17.66■□□□□ 0.42
VCANP13611 ELK1P1-201ENST00000485699 580 ntBASIC17.66■□□□□ 0.42
VCANP13611 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
VCANP13611 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC17.66■□□□□ 0.42
VCANP13611 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC17.66■□□□□ 0.42
VCANP13611 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.66■□□□□ 0.42
VCANP13611 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VCANP13611 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
VCANP13611 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VCANP13611 AC093525.8-201ENST00000624099 1342 ntBASIC17.66■□□□□ 0.42
VCANP13611 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VCANP13611 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
VCANP13611 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
VCANP13611 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VCANP13611 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.66■□□□□ 0.42
VCANP13611 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VCANP13611 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC17.66■□□□□ 0.42
VCANP13611 GPAA1P2-201ENST00000417923 928 ntBASIC17.66■□□□□ 0.42
VCANP13611 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC17.66■□□□□ 0.42
VCANP13611 MPRIPP1-201ENST00000452433 1089 ntBASIC17.66■□□□□ 0.42
VCANP13611 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC17.66■□□□□ 0.42
VCANP13611 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC17.66■□□□□ 0.42
VCANP13611 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC17.66■□□□□ 0.42
VCANP13611 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
VCANP13611 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VCANP13611 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VCANP13611 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC17.66■□□□□ 0.42
VCANP13611 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VCANP13611 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.66■□□□□ 0.42
VCANP13611 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VCANP13611 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VCANP13611 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VCANP13611 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC17.66■□□□□ 0.42
VCANP13611 RASL12-203ENST00000434605 982 ntTSL 2 BASIC17.66■□□□□ 0.42
VCANP13611 RNA5SP412-201ENST00000516234 123 ntBASIC17.66■□□□□ 0.42
VCANP13611 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC17.66■□□□□ 0.42
VCANP13611 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC17.66■□□□□ 0.42
VCANP13611 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VCANP13611 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VCANP13611 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms