Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 ADAM10-203ENST00000402627 861 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
MSH5O43196 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
MSH5O43196 LHFPL3-AS1-202ENST00000416376 866 ntTSL 3 BASIC23.78■■□□□ 1.4
MSH5O43196 MORF4L1P7-201ENST00000426038 703 ntBASIC23.78■■□□□ 1.4
MSH5O43196 MED6P1-201ENST00000439659 713 ntBASIC23.78■■□□□ 1.4
MSH5O43196 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC23.78■■□□□ 1.4
MSH5O43196 AC239804.1-201ENST00000466343 869 ntTSL 5 BASIC23.78■■□□□ 1.4
MSH5O43196 RNPS1P1-201ENST00000507437 918 ntBASIC23.78■■□□□ 1.4
MSH5O43196 AC073648.2-201ENST00000510116 352 ntBASIC23.78■■□□□ 1.4
MSH5O43196 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC23.78■■□□□ 1.4
MSH5O43196 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC23.78■■□□□ 1.4
MSH5O43196 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC23.78■■□□□ 1.4
MSH5O43196 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
MSH5O43196 AC091614.1-201ENST00000606898 879 ntTSL 3 BASIC23.78■■□□□ 1.4
MSH5O43196 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC23.78■■□□□ 1.4
MSH5O43196 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
MSH5O43196 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC23.78■■□□□ 1.4
MSH5O43196 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
MSH5O43196 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC23.78■■□□□ 1.4
MSH5O43196 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
MSH5O43196 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
MSH5O43196 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
MSH5O43196 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
MSH5O43196 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC23.77■■□□□ 1.4
MSH5O43196 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
MSH5O43196 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
MSH5O43196 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
MSH5O43196 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
MSH5O43196 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
MSH5O43196 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
MSH5O43196 USP39-202ENST00000409025 1946 ntTSL 5 BASIC23.77■■□□□ 1.4
MSH5O43196 ZNF815P-204ENST00000434898 1737 ntBASIC23.77■■□□□ 1.4
MSH5O43196 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
MSH5O43196 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
MSH5O43196 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC23.77■■□□□ 1.4
MSH5O43196 KRT18P67-201ENST00000432816 1264 ntBASIC23.77■■□□□ 1.4
MSH5O43196 TRIM36-IT1-201ENST00000503723 881 ntBASIC23.77■■□□□ 1.4
MSH5O43196 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC23.77■■□□□ 1.4
MSH5O43196 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC23.77■■□□□ 1.4
MSH5O43196 AC009065.1-201ENST00000564055 1225 ntBASIC23.77■■□□□ 1.4
MSH5O43196 AP003117.1-201ENST00000602771 554 ntBASIC23.77■■□□□ 1.4
MSH5O43196 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC23.77■■□□□ 1.4
MSH5O43196 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
MSH5O43196 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC23.77■■□□□ 1.4
MSH5O43196 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC23.77■■□□□ 1.4
MSH5O43196 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
MSH5O43196 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
MSH5O43196 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
MSH5O43196 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
MSH5O43196 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC23.77■■□□□ 1.4
MSH5O43196 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC23.77■■□□□ 1.4
MSH5O43196 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
MSH5O43196 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
MSH5O43196 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
MSH5O43196 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
MSH5O43196 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
MSH5O43196 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
MSH5O43196 FAM221A-201ENST00000344962 1472 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
MSH5O43196 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
MSH5O43196 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
MSH5O43196 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
MSH5O43196 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
MSH5O43196 ANKRD19P-201ENST00000338192 862 ntBASIC23.76■■□□□ 1.39
MSH5O43196 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
MSH5O43196 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
MSH5O43196 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC23.76■■□□□ 1.39
MSH5O43196 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC23.76■■□□□ 1.39
MSH5O43196 MTND6P32-201ENST00000457611 483 ntBASIC23.76■■□□□ 1.39
MSH5O43196 RPL13AP23-201ENST00000480739 586 ntBASIC23.76■■□□□ 1.39
MSH5O43196 CSNK1A1-207ENST00000515768 1098 ntAPPRIS P4 TSL 5 BASIC23.76■■□□□ 1.39
MSH5O43196 FAM92A-204ENST00000517718 827 ntTSL 3 BASIC23.76■■□□□ 1.39
MSH5O43196 AC009879.1-201ENST00000520029 839 ntBASIC23.76■■□□□ 1.39
MSH5O43196 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC23.76■■□□□ 1.39
MSH5O43196 BNIP3P40-201ENST00000596017 556 ntBASIC23.76■■□□□ 1.39
MSH5O43196 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
MSH5O43196 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
MSH5O43196 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
MSH5O43196 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
MSH5O43196 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
MSH5O43196 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
MSH5O43196 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC23.76■■□□□ 1.39
MSH5O43196 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
MSH5O43196 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
MSH5O43196 SDHAP1-207ENST00000440850 2000 ntBASIC23.76■■□□□ 1.39
MSH5O43196 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
MSH5O43196 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
MSH5O43196 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
MSH5O43196 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSH5O43196 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC23.75■■□□□ 1.39
MSH5O43196 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSH5O43196 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC23.75■■□□□ 1.39
MSH5O43196 GOLGA6L5P-202ENST00000515341 1828 ntBASIC23.75■■□□□ 1.39
MSH5O43196 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSH5O43196 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC23.75■■□□□ 1.39
MSH5O43196 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
MSH5O43196 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
MSH5O43196 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSH5O43196 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSH5O43196 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSH5O43196 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC23.75■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms