Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 NME9-203ENST00000383180 2133 ntTSL 2 BASIC19.26■□□□□ 0.67
VTA1Q9NP79 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
VTA1Q9NP79 SYS1-203ENST00000414310 795 ntTSL 3 BASIC19.26■□□□□ 0.67
VTA1Q9NP79 AL671277.1-201ENST00000429656 993 ntBASIC19.26■□□□□ 0.67
VTA1Q9NP79 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC19.26■□□□□ 0.67
VTA1Q9NP79 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC19.26■□□□□ 0.67
VTA1Q9NP79 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC19.26■□□□□ 0.67
VTA1Q9NP79 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC19.26■□□□□ 0.67
VTA1Q9NP79 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC19.26■□□□□ 0.67
VTA1Q9NP79 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
VTA1Q9NP79 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC19.26■□□□□ 0.67
VTA1Q9NP79 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC19.26■□□□□ 0.67
VTA1Q9NP79 RPL28-205ENST00000558131 444 ntTSL 5 BASIC19.26■□□□□ 0.67
VTA1Q9NP79 AC025678.2-201ENST00000562061 970 ntBASIC19.26■□□□□ 0.67
VTA1Q9NP79 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
VTA1Q9NP79 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC19.26■□□□□ 0.67
VTA1Q9NP79 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC19.26■□□□□ 0.67
VTA1Q9NP79 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VTA1Q9NP79 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC19.26■□□□□ 0.67
VTA1Q9NP79 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VTA1Q9NP79 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
VTA1Q9NP79 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC19.26■□□□□ 0.67
VTA1Q9NP79 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC19.26■□□□□ 0.67
VTA1Q9NP79 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VTA1Q9NP79 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
VTA1Q9NP79 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
VTA1Q9NP79 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC19.26■□□□□ 0.67
VTA1Q9NP79 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VTA1Q9NP79 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC19.25■□□□□ 0.67
VTA1Q9NP79 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VTA1Q9NP79 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC19.25■□□□□ 0.67
VTA1Q9NP79 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VTA1Q9NP79 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC19.25■□□□□ 0.67
VTA1Q9NP79 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VTA1Q9NP79 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VTA1Q9NP79 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VTA1Q9NP79 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VTA1Q9NP79 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
VTA1Q9NP79 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
VTA1Q9NP79 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC19.25■□□□□ 0.67
VTA1Q9NP79 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC19.25■□□□□ 0.67
VTA1Q9NP79 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC19.25■□□□□ 0.67
VTA1Q9NP79 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC19.25■□□□□ 0.67
VTA1Q9NP79 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
VTA1Q9NP79 AC005412.3-201ENST00000580309 715 ntBASIC19.25■□□□□ 0.67
VTA1Q9NP79 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC19.25■□□□□ 0.67
VTA1Q9NP79 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VTA1Q9NP79 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC19.25■□□□□ 0.67
VTA1Q9NP79 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VTA1Q9NP79 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VTA1Q9NP79 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VTA1Q9NP79 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VTA1Q9NP79 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VTA1Q9NP79 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC19.24■□□□□ 0.67
VTA1Q9NP79 AL354751.1-201ENST00000412768 1863 ntBASIC19.24■□□□□ 0.67
VTA1Q9NP79 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
VTA1Q9NP79 AC133963.1-201ENST00000504166 1679 ntBASIC19.24■□□□□ 0.67
VTA1Q9NP79 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC19.24■□□□□ 0.67
VTA1Q9NP79 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
VTA1Q9NP79 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
VTA1Q9NP79 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VTA1Q9NP79 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.24■□□□□ 0.67
VTA1Q9NP79 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VTA1Q9NP79 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VTA1Q9NP79 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VTA1Q9NP79 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC19.24■□□□□ 0.67
VTA1Q9NP79 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC19.24■□□□□ 0.67
VTA1Q9NP79 AL627223.1-201ENST00000416693 442 ntBASIC19.24■□□□□ 0.67
VTA1Q9NP79 SPDYE11-202ENST00000450699 704 ntBASIC19.24■□□□□ 0.67
VTA1Q9NP79 AC109322.1-201ENST00000524499 1264 ntBASIC19.24■□□□□ 0.67
VTA1Q9NP79 SPDYE9P-201ENST00000570642 692 ntBASIC19.24■□□□□ 0.67
VTA1Q9NP79 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC19.24■□□□□ 0.67
VTA1Q9NP79 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC19.24■□□□□ 0.67
VTA1Q9NP79 SPDYE10P-202ENST00000612005 668 ntBASIC19.24■□□□□ 0.67
VTA1Q9NP79 SPDYE8P-202ENST00000612377 668 ntBASIC19.24■□□□□ 0.67
VTA1Q9NP79 AC009093.7-201ENST00000623853 1223 ntBASIC19.24■□□□□ 0.67
VTA1Q9NP79 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VTA1Q9NP79 LINC00628-201ENST00000628516 1289 ntBASIC19.24■□□□□ 0.67
VTA1Q9NP79 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
VTA1Q9NP79 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
VTA1Q9NP79 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VTA1Q9NP79 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VTA1Q9NP79 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC19.23■□□□□ 0.67
VTA1Q9NP79 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
VTA1Q9NP79 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VTA1Q9NP79 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC19.23■□□□□ 0.67
VTA1Q9NP79 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VTA1Q9NP79 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.23■□□□□ 0.67
VTA1Q9NP79 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC19.23■□□□□ 0.67
VTA1Q9NP79 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VTA1Q9NP79 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VTA1Q9NP79 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
VTA1Q9NP79 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VTA1Q9NP79 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
VTA1Q9NP79 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VTA1Q9NP79 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VTA1Q9NP79 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
VTA1Q9NP79 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC19.23■□□□□ 0.67
VTA1Q9NP79 RN7SL589P-201ENST00000481268 310 ntBASIC19.23■□□□□ 0.67
VTA1Q9NP79 KRT8P48-201ENST00000515599 1220 ntBASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms