Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SHROOM3Q8TF72 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHROOM3Q8TF72 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
SHROOM3Q8TF72 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SHROOM3Q8TF72 AC005915.1-201ENST00000624912 2018 ntBASIC17.62■□□□□ 0.41
SHROOM3Q8TF72 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.62■□□□□ 0.41
SHROOM3Q8TF72 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
SHROOM3Q8TF72 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SHROOM3Q8TF72 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC17.62■□□□□ 0.41
SHROOM3Q8TF72 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC17.62■□□□□ 0.41
SHROOM3Q8TF72 OR7E14P-202ENST00000530490 1290 ntBASIC17.62■□□□□ 0.41
SHROOM3Q8TF72 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC17.62■□□□□ 0.41
SHROOM3Q8TF72 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SHROOM3Q8TF72 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SHROOM3Q8TF72 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC17.62■□□□□ 0.41
SHROOM3Q8TF72 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC17.62■□□□□ 0.41
SHROOM3Q8TF72 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
SHROOM3Q8TF72 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
SHROOM3Q8TF72 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SHROOM3Q8TF72 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SHROOM3Q8TF72 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SHROOM3Q8TF72 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC17.62■□□□□ 0.41
SHROOM3Q8TF72 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SHROOM3Q8TF72 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SHROOM3Q8TF72 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC17.62■□□□□ 0.41
SHROOM3Q8TF72 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SHROOM3Q8TF72 SPDYE21P-201ENST00000413323 827 ntBASIC17.62■□□□□ 0.41
SHROOM3Q8TF72 AC132008.2-207ENST00000454517 770 ntBASIC17.62■□□□□ 0.41
SHROOM3Q8TF72 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC17.62■□□□□ 0.41
SHROOM3Q8TF72 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.62■□□□□ 0.41
SHROOM3Q8TF72 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC17.62■□□□□ 0.41
SHROOM3Q8TF72 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SHROOM3Q8TF72 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC17.62■□□□□ 0.41
SHROOM3Q8TF72 GID4-202ENST00000376345 1391 ntTSL 3 BASIC17.62■□□□□ 0.41
SHROOM3Q8TF72 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SHROOM3Q8TF72 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SHROOM3Q8TF72 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
SHROOM3Q8TF72 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC17.62■□□□□ 0.41
SHROOM3Q8TF72 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SHROOM3Q8TF72 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.62■□□□□ 0.41
SHROOM3Q8TF72 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
SHROOM3Q8TF72 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
SHROOM3Q8TF72 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
SHROOM3Q8TF72 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SHROOM3Q8TF72 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.61■□□□□ 0.41
SHROOM3Q8TF72 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
SHROOM3Q8TF72 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SHROOM3Q8TF72 HNRNPRP1-201ENST00000453465 1695 ntBASIC17.61■□□□□ 0.41
SHROOM3Q8TF72 FRMD8P1-201ENST00000440433 1524 ntBASIC17.61■□□□□ 0.41
SHROOM3Q8TF72 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SHROOM3Q8TF72 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
SHROOM3Q8TF72 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC17.61■□□□□ 0.41
SHROOM3Q8TF72 AP002414.1-201ENST00000391405 1147 ntBASIC17.61■□□□□ 0.41
SHROOM3Q8TF72 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC17.61■□□□□ 0.41
SHROOM3Q8TF72 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SHROOM3Q8TF72 AC012640.2-201ENST00000561606 901 ntBASIC17.61■□□□□ 0.41
SHROOM3Q8TF72 AC073592.4-201ENST00000623827 446 ntBASIC17.61■□□□□ 0.41
SHROOM3Q8TF72 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC17.61■□□□□ 0.41
SHROOM3Q8TF72 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
SHROOM3Q8TF72 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SHROOM3Q8TF72 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
SHROOM3Q8TF72 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SHROOM3Q8TF72 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
SHROOM3Q8TF72 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC17.61■□□□□ 0.41
SHROOM3Q8TF72 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SHROOM3Q8TF72 AC020916.1-201ENST00000587762 1774 ntBASIC17.61■□□□□ 0.41
SHROOM3Q8TF72 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC17.61■□□□□ 0.41
SHROOM3Q8TF72 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SHROOM3Q8TF72 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SHROOM3Q8TF72 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.61■□□□□ 0.41
SHROOM3Q8TF72 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
SHROOM3Q8TF72 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHROOM3Q8TF72 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHROOM3Q8TF72 SOD2-201ENST00000337404 991 ntTSL 2 BASIC17.6■□□□□ 0.41
SHROOM3Q8TF72 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SHROOM3Q8TF72 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC17.6■□□□□ 0.41
SHROOM3Q8TF72 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.6■□□□□ 0.41
SHROOM3Q8TF72 IRF8-202ENST00000562492 946 ntTSL 3 BASIC17.6■□□□□ 0.41
SHROOM3Q8TF72 AC010327.4-202ENST00000591484 748 ntBASIC17.6■□□□□ 0.41
SHROOM3Q8TF72 AC148477.8-201ENST00000624298 468 ntBASIC17.6■□□□□ 0.41
SHROOM3Q8TF72 AC092068.3-201ENST00000587894 2016 ntBASIC17.6■□□□□ 0.41
SHROOM3Q8TF72 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHROOM3Q8TF72 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SHROOM3Q8TF72 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC17.6■□□□□ 0.41
SHROOM3Q8TF72 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC17.6■□□□□ 0.41
SHROOM3Q8TF72 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SHROOM3Q8TF72 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
SHROOM3Q8TF72 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.6■□□□□ 0.41
SHROOM3Q8TF72 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHROOM3Q8TF72 DFFB-203ENST00000341385 572 ntTSL 5 BASIC17.6■□□□□ 0.41
SHROOM3Q8TF72 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHROOM3Q8TF72 FAM197Y8-203ENST00000450145 560 ntBASIC17.6■□□□□ 0.41
SHROOM3Q8TF72 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
SHROOM3Q8TF72 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC17.6■□□□□ 0.41
SHROOM3Q8TF72 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
SHROOM3Q8TF72 HOTTIP_1.1-201ENST00000620415 57 ntBASIC17.6■□□□□ 0.41
SHROOM3Q8TF72 AC008735.5-201ENST00000623544 497 ntBASIC17.6■□□□□ 0.41
SHROOM3Q8TF72 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
SHROOM3Q8TF72 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHROOM3Q8TF72 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms