Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC16.3■□□□□ 0.2
CLIP4Q8N3C7 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC16.3■□□□□ 0.2
CLIP4Q8N3C7 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLIP4Q8N3C7 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC16.3■□□□□ 0.2
CLIP4Q8N3C7 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
CLIP4Q8N3C7 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC16.3■□□□□ 0.2
CLIP4Q8N3C7 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CLIP4Q8N3C7 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLIP4Q8N3C7 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
CLIP4Q8N3C7 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLIP4Q8N3C7 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLIP4Q8N3C7 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CLIP4Q8N3C7 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
CLIP4Q8N3C7 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC16.3■□□□□ 0.2
CLIP4Q8N3C7 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLIP4Q8N3C7 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLIP4Q8N3C7 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.3■□□□□ 0.2
CLIP4Q8N3C7 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC16.3■□□□□ 0.2
CLIP4Q8N3C7 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CLIP4Q8N3C7 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.29■□□□□ 0.2
CLIP4Q8N3C7 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CLIP4Q8N3C7 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC16.29■□□□□ 0.2
CLIP4Q8N3C7 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CLIP4Q8N3C7 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CLIP4Q8N3C7 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLIP4Q8N3C7 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
CLIP4Q8N3C7 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
CLIP4Q8N3C7 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
CLIP4Q8N3C7 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLIP4Q8N3C7 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
CLIP4Q8N3C7 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLIP4Q8N3C7 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC16.29■□□□□ 0.2
CLIP4Q8N3C7 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLIP4Q8N3C7 AL671277.2-201ENST00000458060 996 ntBASIC16.29■□□□□ 0.2
CLIP4Q8N3C7 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC16.29■□□□□ 0.2
CLIP4Q8N3C7 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC16.29■□□□□ 0.2
CLIP4Q8N3C7 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC16.29■□□□□ 0.2
CLIP4Q8N3C7 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CLIP4Q8N3C7 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CLIP4Q8N3C7 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLIP4Q8N3C7 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLIP4Q8N3C7 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLIP4Q8N3C7 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC16.29■□□□□ 0.2
CLIP4Q8N3C7 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLIP4Q8N3C7 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.28■□□□□ 0.2
CLIP4Q8N3C7 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLIP4Q8N3C7 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC16.28■□□□□ 0.2
CLIP4Q8N3C7 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CLIP4Q8N3C7 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLIP4Q8N3C7 PCDHB19P-201ENST00000570871 2371 ntBASIC16.28■□□□□ 0.2
CLIP4Q8N3C7 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLIP4Q8N3C7 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CLIP4Q8N3C7 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLIP4Q8N3C7 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
CLIP4Q8N3C7 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLIP4Q8N3C7 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CLIP4Q8N3C7 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLIP4Q8N3C7 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLIP4Q8N3C7 AC096633.1-201ENST00000422446 749 ntBASIC16.28■□□□□ 0.2
CLIP4Q8N3C7 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CLIP4Q8N3C7 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CLIP4Q8N3C7 CLN6-204ENST00000564752 900 ntTSL 3 BASIC16.28■□□□□ 0.2
CLIP4Q8N3C7 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC16.28■□□□□ 0.2
CLIP4Q8N3C7 CLN6-214ENST00000636314 442 ntTSL 3 BASIC16.28■□□□□ 0.2
CLIP4Q8N3C7 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLIP4Q8N3C7 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
CLIP4Q8N3C7 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLIP4Q8N3C7 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.28■□□□□ 0.2
CLIP4Q8N3C7 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.28■□□□□ 0.2
CLIP4Q8N3C7 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
CLIP4Q8N3C7 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.28■□□□□ 0.2
CLIP4Q8N3C7 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.28■□□□□ 0.2
CLIP4Q8N3C7 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC16.28■□□□□ 0.2
CLIP4Q8N3C7 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLIP4Q8N3C7 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLIP4Q8N3C7 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CLIP4Q8N3C7 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.27■□□□□ 0.2
CLIP4Q8N3C7 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CLIP4Q8N3C7 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CLIP4Q8N3C7 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CLIP4Q8N3C7 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.27■□□□□ 0.2
CLIP4Q8N3C7 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
CLIP4Q8N3C7 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CLIP4Q8N3C7 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
CLIP4Q8N3C7 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.27■□□□□ 0.2
CLIP4Q8N3C7 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
CLIP4Q8N3C7 ADM-208ENST00000534464 1640 ntTSL 2 BASIC16.27■□□□□ 0.2
CLIP4Q8N3C7 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CLIP4Q8N3C7 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.27■□□□□ 0.2
CLIP4Q8N3C7 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC16.27■□□□□ 0.2
CLIP4Q8N3C7 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CLIP4Q8N3C7 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CLIP4Q8N3C7 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
CLIP4Q8N3C7 GUK1-204ENST00000366721 689 ntTSL 3 BASIC16.27■□□□□ 0.2
CLIP4Q8N3C7 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CLIP4Q8N3C7 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
CLIP4Q8N3C7 TMPOP1-202ENST00000424642 1267 ntBASIC16.27■□□□□ 0.2
CLIP4Q8N3C7 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC16.27■□□□□ 0.2
CLIP4Q8N3C7 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC16.27■□□□□ 0.2
CLIP4Q8N3C7 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms