Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP39Q53GS9 ATP6V0CP3-201ENST00000417255 467 ntBASIC17.61■□□□□ 0.41
USP39Q53GS9 AL645939.2-201ENST00000427340 991 ntBASIC17.61■□□□□ 0.41
USP39Q53GS9 SLC25A6P5-201ENST00000435663 894 ntBASIC17.61■□□□□ 0.41
USP39Q53GS9 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
USP39Q53GS9 S100A2-206ENST00000497140 697 ntTSL 2 BASIC17.61■□□□□ 0.41
USP39Q53GS9 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC17.61■□□□□ 0.41
USP39Q53GS9 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC17.61■□□□□ 0.41
USP39Q53GS9 MIR3197-201ENST00000582241 73 ntBASIC17.61■□□□□ 0.41
USP39Q53GS9 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP39Q53GS9 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP39Q53GS9 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP39Q53GS9 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP39Q53GS9 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP39Q53GS9 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP39Q53GS9 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP39Q53GS9 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP39Q53GS9 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP39Q53GS9 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.61■□□□□ 0.41
USP39Q53GS9 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
USP39Q53GS9 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
USP39Q53GS9 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP39Q53GS9 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP39Q53GS9 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP39Q53GS9 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC17.6■□□□□ 0.41
USP39Q53GS9 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP39Q53GS9 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
USP39Q53GS9 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
USP39Q53GS9 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP39Q53GS9 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.6■□□□□ 0.41
USP39Q53GS9 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP39Q53GS9 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
USP39Q53GS9 CD82-202ENST00000342935 967 ntTSL 5 BASIC17.6■□□□□ 0.41
USP39Q53GS9 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP39Q53GS9 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
USP39Q53GS9 KLF4P1-201ENST00000412782 1185 ntBASIC17.6■□□□□ 0.41
USP39Q53GS9 CEND1P1-201ENST00000451006 455 ntBASIC17.6■□□□□ 0.41
USP39Q53GS9 DUTP2-201ENST00000519164 463 ntBASIC17.6■□□□□ 0.41
USP39Q53GS9 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC17.6■□□□□ 0.41
USP39Q53GS9 AP002472.1-201ENST00000577490 586 ntBASIC17.6■□□□□ 0.41
USP39Q53GS9 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC17.6■□□□□ 0.41
USP39Q53GS9 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC17.6■□□□□ 0.41
USP39Q53GS9 AC004790.2-201ENST00000623588 572 ntBASIC17.6■□□□□ 0.41
USP39Q53GS9 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP39Q53GS9 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP39Q53GS9 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
USP39Q53GS9 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
USP39Q53GS9 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP39Q53GS9 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
USP39Q53GS9 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
USP39Q53GS9 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC17.6■□□□□ 0.41
USP39Q53GS9 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
USP39Q53GS9 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP39Q53GS9 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP39Q53GS9 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP39Q53GS9 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.6■□□□□ 0.41
USP39Q53GS9 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP39Q53GS9 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
USP39Q53GS9 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
USP39Q53GS9 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.59■□□□□ 0.41
USP39Q53GS9 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
USP39Q53GS9 ELL2P1-201ENST00000413990 1906 ntBASIC17.59■□□□□ 0.41
USP39Q53GS9 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.59■□□□□ 0.41
USP39Q53GS9 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
USP39Q53GS9 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
USP39Q53GS9 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC17.59■□□□□ 0.41
USP39Q53GS9 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
USP39Q53GS9 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
USP39Q53GS9 AC003669.1-201ENST00000334569 611 ntBASIC17.59■□□□□ 0.41
USP39Q53GS9 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP39Q53GS9 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP39Q53GS9 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC17.59■□□□□ 0.41
USP39Q53GS9 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC17.59■□□□□ 0.41
USP39Q53GS9 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC17.59■□□□□ 0.41
USP39Q53GS9 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
USP39Q53GS9 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC17.59■□□□□ 0.41
USP39Q53GS9 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC17.59■□□□□ 0.41
USP39Q53GS9 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC17.59■□□□□ 0.41
USP39Q53GS9 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC17.59■□□□□ 0.41
USP39Q53GS9 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC17.59■□□□□ 0.41
USP39Q53GS9 CCND1-203ENST00000536559 553 ntTSL 3 BASIC17.59■□□□□ 0.41
USP39Q53GS9 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
USP39Q53GS9 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC17.59■□□□□ 0.41
USP39Q53GS9 AL078644.1-201ENST00000609881 752 ntBASIC17.59■□□□□ 0.41
USP39Q53GS9 AL513190.1-201ENST00000621254 727 ntBASIC17.59■□□□□ 0.41
USP39Q53GS9 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC17.59■□□□□ 0.41
USP39Q53GS9 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.59■□□□□ 0.41
USP39Q53GS9 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.59■□□□□ 0.41
USP39Q53GS9 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.59■□□□□ 0.41
USP39Q53GS9 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
USP39Q53GS9 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP39Q53GS9 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP39Q53GS9 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP39Q53GS9 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP39Q53GS9 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.59■□□□□ 0.41
USP39Q53GS9 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
USP39Q53GS9 AL096828.2-201ENST00000567259 1965 ntBASIC17.59■□□□□ 0.41
USP39Q53GS9 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
USP39Q53GS9 AC132938.5-201ENST00000624980 1813 ntBASIC17.58■□□□□ 0.41
USP39Q53GS9 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms