Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
CCDC88AQ3V6T2 UXT-AS1-201ENST00000590504 1525 ntBASIC21■□□□□ 0.95
CCDC88AQ3V6T2 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC21■□□□□ 0.95
CCDC88AQ3V6T2 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC88AQ3V6T2 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC21■□□□□ 0.95
CCDC88AQ3V6T2 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC21■□□□□ 0.95
CCDC88AQ3V6T2 INO80E-210ENST00000567705 880 ntTSL 3 BASIC21■□□□□ 0.95
CCDC88AQ3V6T2 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC21■□□□□ 0.95
CCDC88AQ3V6T2 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC21■□□□□ 0.95
CCDC88AQ3V6T2 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC88AQ3V6T2 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC21■□□□□ 0.95
CCDC88AQ3V6T2 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC21■□□□□ 0.95
CCDC88AQ3V6T2 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC88AQ3V6T2 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC88AQ3V6T2 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC88AQ3V6T2 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC88AQ3V6T2 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC88AQ3V6T2 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC20.99■□□□□ 0.95
CCDC88AQ3V6T2 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC88AQ3V6T2 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC20.99■□□□□ 0.95
CCDC88AQ3V6T2 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC88AQ3V6T2 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC88AQ3V6T2 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC20.99■□□□□ 0.95
CCDC88AQ3V6T2 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC88AQ3V6T2 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
CCDC88AQ3V6T2 AL359881.2-201ENST00000602973 570 ntBASIC20.99■□□□□ 0.95
CCDC88AQ3V6T2 AL009183.1-201ENST00000603760 355 ntBASIC20.99■□□□□ 0.95
CCDC88AQ3V6T2 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC20.99■□□□□ 0.95
CCDC88AQ3V6T2 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC20.99■□□□□ 0.95
CCDC88AQ3V6T2 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC20.99■□□□□ 0.95
CCDC88AQ3V6T2 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC20.99■□□□□ 0.95
CCDC88AQ3V6T2 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC20.99■□□□□ 0.95
CCDC88AQ3V6T2 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
CCDC88AQ3V6T2 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC88AQ3V6T2 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC88AQ3V6T2 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
CCDC88AQ3V6T2 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC88AQ3V6T2 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC88AQ3V6T2 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
CCDC88AQ3V6T2 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC20.98■□□□□ 0.95
CCDC88AQ3V6T2 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC88AQ3V6T2 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC20.98■□□□□ 0.95
CCDC88AQ3V6T2 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC20.98■□□□□ 0.95
CCDC88AQ3V6T2 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
CCDC88AQ3V6T2 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC88AQ3V6T2 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC20.98■□□□□ 0.95
CCDC88AQ3V6T2 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC20.98■□□□□ 0.95
CCDC88AQ3V6T2 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC20.98■□□□□ 0.95
CCDC88AQ3V6T2 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC88AQ3V6T2 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC20.98■□□□□ 0.95
CCDC88AQ3V6T2 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC20.98■□□□□ 0.95
CCDC88AQ3V6T2 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC88AQ3V6T2 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC88AQ3V6T2 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC20.98■□□□□ 0.95
CCDC88AQ3V6T2 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC20.98■□□□□ 0.95
CCDC88AQ3V6T2 MMP17-203ENST00000535004 719 ntTSL 3 BASIC20.98■□□□□ 0.95
CCDC88AQ3V6T2 CR383656.12-201ENST00000549567 513 ntBASIC20.98■□□□□ 0.95
CCDC88AQ3V6T2 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC20.98■□□□□ 0.95
CCDC88AQ3V6T2 LINC01451-201ENST00000623792 534 ntBASIC20.98■□□□□ 0.95
CCDC88AQ3V6T2 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
CCDC88AQ3V6T2 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
CCDC88AQ3V6T2 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
CCDC88AQ3V6T2 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC88AQ3V6T2 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC88AQ3V6T2 NME9-203ENST00000383180 2133 ntTSL 2 BASIC20.98■□□□□ 0.95
CCDC88AQ3V6T2 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC88AQ3V6T2 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC20.97■□□□□ 0.95
CCDC88AQ3V6T2 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC88AQ3V6T2 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC88AQ3V6T2 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
CCDC88AQ3V6T2 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC88AQ3V6T2 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC20.97■□□□□ 0.95
CCDC88AQ3V6T2 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC20.97■□□□□ 0.95
CCDC88AQ3V6T2 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC88AQ3V6T2 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC20.97■□□□□ 0.95
CCDC88AQ3V6T2 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC88AQ3V6T2 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC20.97■□□□□ 0.95
CCDC88AQ3V6T2 AL671277.1-201ENST00000429656 993 ntBASIC20.97■□□□□ 0.95
CCDC88AQ3V6T2 AC241585.1-201ENST00000433527 519 ntBASIC20.97■□□□□ 0.95
CCDC88AQ3V6T2 COQ6-210ENST00000554920 649 ntTSL 3 BASIC20.97■□□□□ 0.95
CCDC88AQ3V6T2 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC20.97■□□□□ 0.95
CCDC88AQ3V6T2 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
CCDC88AQ3V6T2 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC20.97■□□□□ 0.95
CCDC88AQ3V6T2 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC88AQ3V6T2 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC88AQ3V6T2 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC88AQ3V6T2 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
CCDC88AQ3V6T2 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC88AQ3V6T2 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC88AQ3V6T2 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC20.97■□□□□ 0.95
CCDC88AQ3V6T2 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC88AQ3V6T2 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC88AQ3V6T2 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
CCDC88AQ3V6T2 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC20.97■□□□□ 0.95
CCDC88AQ3V6T2 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC20.97■□□□□ 0.95
CCDC88AQ3V6T2 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC88AQ3V6T2 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC20.96■□□□□ 0.95
CCDC88AQ3V6T2 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC88AQ3V6T2 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC88AQ3V6T2 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms