Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC16.72■□□□□ 0.27
PCDH1Q08174 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDH1Q08174 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC16.72■□□□□ 0.27
PCDH1Q08174 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PCDH1Q08174 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PCDH1Q08174 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
PCDH1Q08174 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PCDH1Q08174 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDH1Q08174 AL020989.1-201ENST00000422979 469 ntBASIC16.72■□□□□ 0.27
PCDH1Q08174 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDH1Q08174 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDH1Q08174 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC16.72■□□□□ 0.27
PCDH1Q08174 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PCDH1Q08174 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
PCDH1Q08174 AC099336.1-202ENST00000602961 463 ntBASIC16.72■□□□□ 0.27
PCDH1Q08174 IGHV3OR16-7-201ENST00000604106 360 ntBASIC16.72■□□□□ 0.27
PCDH1Q08174 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PCDH1Q08174 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC16.72■□□□□ 0.27
PCDH1Q08174 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
PCDH1Q08174 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
PCDH1Q08174 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PCDH1Q08174 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDH1Q08174 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
PCDH1Q08174 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.72■□□□□ 0.27
PCDH1Q08174 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PCDH1Q08174 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDH1Q08174 EGFEM1P-202ENST00000431685 1563 ntBASIC16.72■□□□□ 0.27
PCDH1Q08174 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC16.72■□□□□ 0.27
PCDH1Q08174 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PCDH1Q08174 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PCDH1Q08174 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDH1Q08174 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.72■□□□□ 0.27
PCDH1Q08174 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
PCDH1Q08174 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
PCDH1Q08174 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PCDH1Q08174 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDH1Q08174 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDH1Q08174 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.71■□□□□ 0.27
PCDH1Q08174 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC16.71■□□□□ 0.27
PCDH1Q08174 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC16.71■□□□□ 0.27
PCDH1Q08174 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PCDH1Q08174 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDH1Q08174 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDH1Q08174 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDH1Q08174 FUOM-202ENST00000368551 628 ntTSL 3 BASIC16.71■□□□□ 0.27
PCDH1Q08174 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
PCDH1Q08174 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
PCDH1Q08174 ACTG1P4-201ENST00000425123 1122 ntBASIC16.71■□□□□ 0.27
PCDH1Q08174 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
PCDH1Q08174 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.71■□□□□ 0.27
PCDH1Q08174 PRYP5-201ENST00000451909 266 ntBASIC16.71■□□□□ 0.27
PCDH1Q08174 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC16.71■□□□□ 0.27
PCDH1Q08174 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC16.71■□□□□ 0.27
PCDH1Q08174 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PCDH1Q08174 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDH1Q08174 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PCDH1Q08174 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PCDH1Q08174 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDH1Q08174 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDH1Q08174 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.71■□□□□ 0.27
PCDH1Q08174 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
PCDH1Q08174 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PCDH1Q08174 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
PCDH1Q08174 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
PCDH1Q08174 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
PCDH1Q08174 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.26
PCDH1Q08174 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH1Q08174 AC079776.2-201ENST00000641154 1609 ntBASIC16.7■□□□□ 0.26
PCDH1Q08174 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC16.7■□□□□ 0.26
PCDH1Q08174 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.7■□□□□ 0.26
PCDH1Q08174 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH1Q08174 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
PCDH1Q08174 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC16.7■□□□□ 0.26
PCDH1Q08174 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
PCDH1Q08174 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC16.7■□□□□ 0.26
PCDH1Q08174 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
PCDH1Q08174 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH1Q08174 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH1Q08174 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
PCDH1Q08174 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH1Q08174 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH1Q08174 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH1Q08174 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH1Q08174 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH1Q08174 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH1Q08174 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH1Q08174 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH1Q08174 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH1Q08174 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH1Q08174 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.7■□□□□ 0.26
PCDH1Q08174 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC16.7■□□□□ 0.26
PCDH1Q08174 UPK3BP1-201ENST00000428678 509 ntBASIC16.7■□□□□ 0.26
PCDH1Q08174 SIGLEC30P-201ENST00000455569 941 ntBASIC16.7■□□□□ 0.26
PCDH1Q08174 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC16.7■□□□□ 0.26
PCDH1Q08174 AC106795.1-205ENST00000512851 1056 ntBASIC16.7■□□□□ 0.26
PCDH1Q08174 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC16.7■□□□□ 0.26
PCDH1Q08174 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.7■□□□□ 0.26
PCDH1Q08174 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH1Q08174 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC16.7■□□□□ 0.26
PCDH1Q08174 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms