Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.07
CLRN1P58418 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLRN1P58418 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC15.51■□□□□ 0.07
CLRN1P58418 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLRN1P58418 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLRN1P58418 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC15.51■□□□□ 0.07
CLRN1P58418 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CLRN1P58418 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLRN1P58418 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CLRN1P58418 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC15.51■□□□□ 0.07
CLRN1P58418 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLRN1P58418 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLRN1P58418 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLRN1P58418 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
CLRN1P58418 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLRN1P58418 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC15.51■□□□□ 0.07
CLRN1P58418 KLF4P1-201ENST00000412782 1185 ntBASIC15.51■□□□□ 0.07
CLRN1P58418 POM121L3P-201ENST00000419331 1163 ntBASIC15.51■□□□□ 0.07
CLRN1P58418 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
CLRN1P58418 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC15.51■□□□□ 0.07
CLRN1P58418 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC15.51■□□□□ 0.07
CLRN1P58418 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC15.51■□□□□ 0.07
CLRN1P58418 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
CLRN1P58418 PNN-202ENST00000553331 656 ntTSL 3 BASIC15.51■□□□□ 0.07
CLRN1P58418 STK25P1-201ENST00000585406 838 ntBASIC15.51■□□□□ 0.07
CLRN1P58418 AC114341.1-201ENST00000618070 349 ntBASIC15.51■□□□□ 0.07
CLRN1P58418 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CLRN1P58418 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC15.51■□□□□ 0.07
CLRN1P58418 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
CLRN1P58418 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLRN1P58418 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC15.51■□□□□ 0.07
CLRN1P58418 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLRN1P58418 AL353593.2-201ENST00000602529 1483 ntBASIC15.51■□□□□ 0.07
CLRN1P58418 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC15.51■□□□□ 0.07
CLRN1P58418 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC15.51■□□□□ 0.07
CLRN1P58418 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CLRN1P58418 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CLRN1P58418 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC15.51■□□□□ 0.07
CLRN1P58418 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN1P58418 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
CLRN1P58418 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN1P58418 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
CLRN1P58418 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
CLRN1P58418 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN1P58418 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN1P58418 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN1P58418 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN1P58418 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC15.5■□□□□ 0.07
CLRN1P58418 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
CLRN1P58418 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN1P58418 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN1P58418 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN1P58418 RCN1P2-201ENST00000398357 915 ntBASIC15.5■□□□□ 0.07
CLRN1P58418 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN1P58418 NUS1P2-201ENST00000417358 873 ntBASIC15.5■□□□□ 0.07
CLRN1P58418 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC15.5■□□□□ 0.07
CLRN1P58418 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC15.5■□□□□ 0.07
CLRN1P58418 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN1P58418 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
CLRN1P58418 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC15.5■□□□□ 0.07
CLRN1P58418 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
CLRN1P58418 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
CLRN1P58418 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN1P58418 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
CLRN1P58418 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN1P58418 INTS4P1-201ENST00000438455 1935 ntBASIC15.5■□□□□ 0.07
CLRN1P58418 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN1P58418 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN1P58418 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN1P58418 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
CLRN1P58418 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
CLRN1P58418 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
CLRN1P58418 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC15.5■□□□□ 0.07
CLRN1P58418 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC15.5■□□□□ 0.07
CLRN1P58418 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CLRN1P58418 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLRN1P58418 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CLRN1P58418 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC15.49■□□□□ 0.07
CLRN1P58418 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLRN1P58418 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
CLRN1P58418 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLRN1P58418 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
CLRN1P58418 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLRN1P58418 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLRN1P58418 AC003669.1-201ENST00000334569 611 ntBASIC15.49■□□□□ 0.07
CLRN1P58418 FUOM-202ENST00000368551 628 ntTSL 3 BASIC15.49■□□□□ 0.07
CLRN1P58418 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLRN1P58418 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC15.49■□□□□ 0.07
CLRN1P58418 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CLRN1P58418 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC15.49■□□□□ 0.07
CLRN1P58418 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC15.49■□□□□ 0.07
CLRN1P58418 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC15.49■□□□□ 0.07
CLRN1P58418 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CLRN1P58418 COX5A-202ENST00000562233 441 ntTSL 3 BASIC15.49■□□□□ 0.07
CLRN1P58418 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC15.49■□□□□ 0.07
CLRN1P58418 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC15.49■□□□□ 0.07
CLRN1P58418 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CLRN1P58418 AC073592.5-201ENST00000624854 528 ntBASIC15.49■□□□□ 0.07
CLRN1P58418 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
CLRN1P58418 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms