Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDAC4P56524 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDAC4P56524 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDAC4P56524 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC18.11■□□□□ 0.49
HDAC4P56524 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDAC4P56524 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDAC4P56524 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDAC4P56524 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDAC4P56524 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDAC4P56524 AKR1C7P-201ENST00000305623 895 ntBASIC18.11■□□□□ 0.49
HDAC4P56524 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDAC4P56524 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC18.11■□□□□ 0.49
HDAC4P56524 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDAC4P56524 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDAC4P56524 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC18.11■□□□□ 0.49
HDAC4P56524 DUSP5P1-201ENST00000441325 1139 ntBASIC18.11■□□□□ 0.49
HDAC4P56524 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC18.11■□□□□ 0.49
HDAC4P56524 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC18.11■□□□□ 0.49
HDAC4P56524 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC18.11■□□□□ 0.49
HDAC4P56524 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC18.11■□□□□ 0.49
HDAC4P56524 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC18.11■□□□□ 0.49
HDAC4P56524 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC18.11■□□□□ 0.49
HDAC4P56524 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
HDAC4P56524 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
HDAC4P56524 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDAC4P56524 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC18.11■□□□□ 0.49
HDAC4P56524 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC18.11■□□□□ 0.49
HDAC4P56524 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HDAC4P56524 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HDAC4P56524 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
HDAC4P56524 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDAC4P56524 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDAC4P56524 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDAC4P56524 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HDAC4P56524 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDAC4P56524 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HDAC4P56524 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
HDAC4P56524 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HDAC4P56524 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDAC4P56524 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC18.1■□□□□ 0.49
HDAC4P56524 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDAC4P56524 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDAC4P56524 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC18.1■□□□□ 0.49
HDAC4P56524 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HDAC4P56524 IPPK-202ENST00000375522 882 ntTSL 3 BASIC18.1■□□□□ 0.49
HDAC4P56524 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HDAC4P56524 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC18.1■□□□□ 0.49
HDAC4P56524 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC18.1■□□□□ 0.49
HDAC4P56524 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC18.1■□□□□ 0.49
HDAC4P56524 UNC93B7-201ENST00000509439 705 ntBASIC18.1■□□□□ 0.49
HDAC4P56524 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDAC4P56524 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HDAC4P56524 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
HDAC4P56524 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDAC4P56524 REXO1L6P-202ENST00000619970 1078 ntBASIC18.1■□□□□ 0.49
HDAC4P56524 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDAC4P56524 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDAC4P56524 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDAC4P56524 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDAC4P56524 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDAC4P56524 AC080080.1-201ENST00000625121 2420 ntBASIC18.1■□□□□ 0.49
HDAC4P56524 AC004817.3-201ENST00000602957 2129 ntBASIC18.1■□□□□ 0.49
HDAC4P56524 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
HDAC4P56524 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDAC4P56524 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
HDAC4P56524 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HDAC4P56524 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
HDAC4P56524 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
HDAC4P56524 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
HDAC4P56524 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
HDAC4P56524 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC18.09■□□□□ 0.49
HDAC4P56524 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
HDAC4P56524 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
HDAC4P56524 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
HDAC4P56524 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HDAC4P56524 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
HDAC4P56524 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HDAC4P56524 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HDAC4P56524 RBM17P3-201ENST00000417687 1192 ntBASIC18.09■□□□□ 0.49
HDAC4P56524 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HDAC4P56524 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
HDAC4P56524 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC18.09■□□□□ 0.49
HDAC4P56524 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC18.09■□□□□ 0.49
HDAC4P56524 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC18.09■□□□□ 0.49
HDAC4P56524 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HDAC4P56524 IFNL4P1-201ENST00000607083 540 ntBASIC18.09■□□□□ 0.49
HDAC4P56524 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC18.09■□□□□ 0.49
HDAC4P56524 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC18.09■□□□□ 0.49
HDAC4P56524 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
HDAC4P56524 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC18.09■□□□□ 0.49
HDAC4P56524 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC18.09■□□□□ 0.49
HDAC4P56524 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
HDAC4P56524 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HDAC4P56524 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC18.09■□□□□ 0.49
HDAC4P56524 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HDAC4P56524 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HDAC4P56524 AC093525.9-201ENST00000624961 1746 ntBASIC18.09■□□□□ 0.49
HDAC4P56524 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
HDAC4P56524 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
HDAC4P56524 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC18.08■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms