Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
LIM2P55344 HR-201ENST00000312841 5351 ntTSL 5 BASIC16.46■□□□□ 0.22
LIM2P55344 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC16.45■□□□□ 0.22
LIM2P55344 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
LIM2P55344 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
LIM2P55344 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.45■□□□□ 0.22
LIM2P55344 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
LIM2P55344 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
LIM2P55344 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
LIM2P55344 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LIM2P55344 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LIM2P55344 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LIM2P55344 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LIM2P55344 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC16.45■□□□□ 0.22
LIM2P55344 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC16.45■□□□□ 0.22
LIM2P55344 BX005266.1-201ENST00000473402 457 ntBASIC16.45■□□□□ 0.22
LIM2P55344 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC16.45■□□□□ 0.22
LIM2P55344 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LIM2P55344 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.45■□□□□ 0.22
LIM2P55344 NKAPP1-205ENST00000585790 367 ntBASIC16.45■□□□□ 0.22
LIM2P55344 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC16.45■□□□□ 0.22
LIM2P55344 AL139288.1-201ENST00000623748 933 ntBASIC16.45■□□□□ 0.22
LIM2P55344 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC16.45■□□□□ 0.22
LIM2P55344 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
LIM2P55344 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC16.45■□□□□ 0.22
LIM2P55344 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LIM2P55344 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
LIM2P55344 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC16.45■□□□□ 0.22
LIM2P55344 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LIM2P55344 AC004817.3-201ENST00000602957 2129 ntBASIC16.45■□□□□ 0.22
LIM2P55344 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LIM2P55344 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC16.45■□□□□ 0.22
LIM2P55344 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
LIM2P55344 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LIM2P55344 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LIM2P55344 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC16.45■□□□□ 0.22
LIM2P55344 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
LIM2P55344 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
LIM2P55344 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
LIM2P55344 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
LIM2P55344 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.44■□□□□ 0.22
LIM2P55344 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.44■□□□□ 0.22
LIM2P55344 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC16.44■□□□□ 0.22
LIM2P55344 AL135999.2-201ENST00000622438 1686 ntBASIC16.44■□□□□ 0.22
LIM2P55344 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LIM2P55344 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
LIM2P55344 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC16.44■□□□□ 0.22
LIM2P55344 IRF8-202ENST00000562492 946 ntTSL 3 BASIC16.44■□□□□ 0.22
LIM2P55344 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
LIM2P55344 COPE-211ENST00000600932 1144 ntTSL 5 BASIC16.44■□□□□ 0.22
LIM2P55344 AL691432.3-201ENST00000621860 400 ntBASIC16.44■□□□□ 0.22
LIM2P55344 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.44■□□□□ 0.22
LIM2P55344 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
LIM2P55344 NKILA-202ENST00000614771 2598 ntBASIC16.44■□□□□ 0.22
LIM2P55344 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LIM2P55344 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
LIM2P55344 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
LIM2P55344 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC16.44■□□□□ 0.22
LIM2P55344 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
LIM2P55344 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LIM2P55344 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LIM2P55344 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
LIM2P55344 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LIM2P55344 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LIM2P55344 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
LIM2P55344 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LIM2P55344 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC16.43■□□□□ 0.22
LIM2P55344 AC004870.1-201ENST00000315132 882 ntBASIC16.43■□□□□ 0.22
LIM2P55344 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC16.43■□□□□ 0.22
LIM2P55344 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC16.43■□□□□ 0.22
LIM2P55344 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LIM2P55344 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
LIM2P55344 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
LIM2P55344 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LIM2P55344 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC16.43■□□□□ 0.22
LIM2P55344 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC16.43■□□□□ 0.22
LIM2P55344 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC16.43■□□□□ 0.22
LIM2P55344 PP7080-204ENST00000510714 601 ntTSL 3 BASIC16.43■□□□□ 0.22
LIM2P55344 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LIM2P55344 SART3-203ENST00000546611 1184 ntBASIC16.43■□□□□ 0.22
LIM2P55344 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC16.43■□□□□ 0.22
LIM2P55344 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LIM2P55344 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LIM2P55344 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LIM2P55344 AC011676.5-201ENST00000624864 2660 ntBASIC16.43■□□□□ 0.22
LIM2P55344 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
LIM2P55344 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LIM2P55344 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LIM2P55344 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC16.43■□□□□ 0.22
LIM2P55344 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LIM2P55344 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LIM2P55344 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.43■□□□□ 0.22
LIM2P55344 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LIM2P55344 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
LIM2P55344 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.42■□□□□ 0.22
LIM2P55344 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIM2P55344 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIM2P55344 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LIM2P55344 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.42■□□□□ 0.22
LIM2P55344 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms