Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CDH6P55285 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDH6P55285 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CDH6P55285 AC009053.2-201ENST00000563701 2365 ntBASIC18.04■□□□□ 0.48
CDH6P55285 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDH6P55285 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC18.04■□□□□ 0.48
CDH6P55285 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
CDH6P55285 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDH6P55285 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDH6P55285 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDH6P55285 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC18.04■□□□□ 0.48
CDH6P55285 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC18.04■□□□□ 0.48
CDH6P55285 HCG4P8-203ENST00000443049 980 ntBASIC18.04■□□□□ 0.48
CDH6P55285 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC18.04■□□□□ 0.48
CDH6P55285 COX5A-204ENST00000567270 579 ntTSL 3 BASIC18.04■□□□□ 0.48
CDH6P55285 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CDH6P55285 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDH6P55285 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDH6P55285 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDH6P55285 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CDH6P55285 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDH6P55285 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CDH6P55285 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CDH6P55285 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC18.04■□□□□ 0.48
CDH6P55285 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CDH6P55285 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CDH6P55285 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC18.04■□□□□ 0.48
CDH6P55285 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
CDH6P55285 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC18.04■□□□□ 0.48
CDH6P55285 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDH6P55285 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC18.04■□□□□ 0.48
CDH6P55285 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CDH6P55285 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CDH6P55285 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH6P55285 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC18.03■□□□□ 0.48
CDH6P55285 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH6P55285 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC18.03■□□□□ 0.48
CDH6P55285 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
CDH6P55285 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH6P55285 AL135999.2-201ENST00000622438 1686 ntBASIC18.03■□□□□ 0.48
CDH6P55285 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC18.03■□□□□ 0.48
CDH6P55285 AC060834.1-201ENST00000443027 2032 ntBASIC18.03■□□□□ 0.48
CDH6P55285 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH6P55285 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH6P55285 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC18.03■□□□□ 0.48
CDH6P55285 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC18.03■□□□□ 0.48
CDH6P55285 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC18.03■□□□□ 0.48
CDH6P55285 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH6P55285 AC138894.3-201ENST00000603787 634 ntBASIC18.03■□□□□ 0.48
CDH6P55285 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC18.03■□□□□ 0.48
CDH6P55285 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC18.03■□□□□ 0.48
CDH6P55285 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC18.03■□□□□ 0.48
CDH6P55285 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
CDH6P55285 PMPCAP1-201ENST00000508114 1576 ntBASIC18.03■□□□□ 0.48
CDH6P55285 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH6P55285 LINC02012-201ENST00000608206 1725 ntBASIC18.03■□□□□ 0.48
CDH6P55285 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH6P55285 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH6P55285 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC18.03■□□□□ 0.48
CDH6P55285 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CDH6P55285 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH6P55285 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC18.03■□□□□ 0.48
CDH6P55285 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.48
CDH6P55285 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CDH6P55285 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDH6P55285 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CDH6P55285 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC18.02■□□□□ 0.48
CDH6P55285 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CDH6P55285 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDH6P55285 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC18.02■□□□□ 0.48
CDH6P55285 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CDH6P55285 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CDH6P55285 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
CDH6P55285 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC18.02■□□□□ 0.48
CDH6P55285 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CDH6P55285 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC18.02■□□□□ 0.48
CDH6P55285 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDH6P55285 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC18.02■□□□□ 0.48
CDH6P55285 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CDH6P55285 MIR5100-201ENST00000579544 119 ntBASIC18.02■□□□□ 0.48
CDH6P55285 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC18.02■□□□□ 0.48
CDH6P55285 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC18.02■□□□□ 0.48
CDH6P55285 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDH6P55285 NF2-208ENST00000403435 2568 ntTSL 5 BASIC18.02■□□□□ 0.47
CDH6P55285 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CDH6P55285 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC18.02■□□□□ 0.47
CDH6P55285 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CDH6P55285 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CDH6P55285 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CDH6P55285 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CDH6P55285 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CDH6P55285 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CDH6P55285 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CDH6P55285 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC18.02■□□□□ 0.47
CDH6P55285 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
CDH6P55285 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CDH6P55285 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC18.02■□□□□ 0.47
CDH6P55285 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
CDH6P55285 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC18.01■□□□□ 0.47
CDH6P55285 AL121761.2-201ENST00000598007 1648 ntBASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms