Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC23.73■■□□□ 1.39
MSH6P52701 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
MSH6P52701 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
MSH6P52701 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC23.73■■□□□ 1.39
MSH6P52701 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
MSH6P52701 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
MSH6P52701 AC012569.1-201ENST00000591191 1524 ntBASIC23.72■■□□□ 1.39
MSH6P52701 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
MSH6P52701 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
MSH6P52701 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
MSH6P52701 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
MSH6P52701 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
MSH6P52701 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
MSH6P52701 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
MSH6P52701 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
MSH6P52701 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
MSH6P52701 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC23.72■■□□□ 1.39
MSH6P52701 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
MSH6P52701 AC009477.1-201ENST00000452936 217 ntBASIC23.72■■□□□ 1.39
MSH6P52701 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC23.72■■□□□ 1.39
MSH6P52701 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
MSH6P52701 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
MSH6P52701 API5-211ENST00000534695 560 ntTSL 5 BASIC23.72■■□□□ 1.39
MSH6P52701 AL162274.1-201ENST00000617191 1098 ntBASIC23.72■■□□□ 1.39
MSH6P52701 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC23.72■■□□□ 1.39
MSH6P52701 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
MSH6P52701 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
MSH6P52701 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC23.72■■□□□ 1.39
MSH6P52701 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
MSH6P52701 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
MSH6P52701 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
MSH6P52701 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
MSH6P52701 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC23.71■■□□□ 1.39
MSH6P52701 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
MSH6P52701 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
MSH6P52701 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC23.71■■□□□ 1.39
MSH6P52701 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
MSH6P52701 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
MSH6P52701 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC23.71■■□□□ 1.39
MSH6P52701 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
MSH6P52701 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
MSH6P52701 Six3os1_5.1-201ENST00000611000 271 ntBASIC23.71■■□□□ 1.39
MSH6P52701 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
MSH6P52701 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
MSH6P52701 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC23.71■■□□□ 1.39
MSH6P52701 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
MSH6P52701 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.39
MSH6P52701 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.39
MSH6P52701 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
MSH6P52701 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
MSH6P52701 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC23.7■■□□□ 1.38
MSH6P52701 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
MSH6P52701 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC23.7■■□□□ 1.38
MSH6P52701 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
MSH6P52701 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC23.7■■□□□ 1.38
MSH6P52701 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC23.7■■□□□ 1.38
MSH6P52701 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
MSH6P52701 INE1-201ENST00000456273 945 ntBASIC23.7■■□□□ 1.38
MSH6P52701 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
MSH6P52701 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC23.7■■□□□ 1.38
MSH6P52701 MPI-209ENST00000564003 1195 ntTSL 2 BASIC23.7■■□□□ 1.38
MSH6P52701 ARL16-202ENST00000570561 768 ntTSL 2 BASIC23.7■■□□□ 1.38
MSH6P52701 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC23.7■■□□□ 1.38
MSH6P52701 GPER1-207ENST00000619052 571 ntTSL 2 BASIC23.7■■□□□ 1.38
MSH6P52701 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
MSH6P52701 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC23.7■■□□□ 1.38
MSH6P52701 AC093503.3-201ENST00000624917 2352 ntBASIC23.7■■□□□ 1.38
MSH6P52701 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC23.7■■□□□ 1.38
MSH6P52701 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
MSH6P52701 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
MSH6P52701 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC23.7■■□□□ 1.38
MSH6P52701 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
MSH6P52701 AIRN-201ENST00000601203 4374 ntBASIC23.7■■□□□ 1.38
MSH6P52701 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
MSH6P52701 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
MSH6P52701 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
MSH6P52701 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
MSH6P52701 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
MSH6P52701 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC23.69■■□□□ 1.38
MSH6P52701 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC23.69■■□□□ 1.38
MSH6P52701 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC23.69■■□□□ 1.38
MSH6P52701 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC23.69■■□□□ 1.38
MSH6P52701 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
MSH6P52701 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC23.69■■□□□ 1.38
MSH6P52701 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC23.69■■□□□ 1.38
MSH6P52701 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC23.69■■□□□ 1.38
MSH6P52701 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC23.69■■□□□ 1.38
MSH6P52701 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC23.69■■□□□ 1.38
MSH6P52701 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC23.69■■□□□ 1.38
MSH6P52701 AMT-250ENST00000637682 1823 ntTSL 5 BASIC23.69■■□□□ 1.38
MSH6P52701 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
MSH6P52701 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
MSH6P52701 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
MSH6P52701 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC23.69■■□□□ 1.38
MSH6P52701 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC23.68■■□□□ 1.38
MSH6P52701 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
MSH6P52701 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC23.68■■□□□ 1.38
MSH6P52701 HLA-V-204ENST00000476601 1289 ntBASIC23.68■■□□□ 1.38
MSH6P52701 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
MSH6P52701 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC23.68■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms