Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
SCN4AP35499 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
SCN4AP35499 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SCN4AP35499 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SCN4AP35499 TTTY23B-201ENST00000442790 549 ntBASIC20.19■□□□□ 0.82
SCN4AP35499 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC20.19■□□□□ 0.82
SCN4AP35499 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.19■□□□□ 0.82
SCN4AP35499 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
SCN4AP35499 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
SCN4AP35499 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SCN4AP35499 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SCN4AP35499 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SCN4AP35499 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SCN4AP35499 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC20.19■□□□□ 0.82
SCN4AP35499 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SCN4AP35499 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC20.19■□□□□ 0.82
SCN4AP35499 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SCN4AP35499 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC20.19■□□□□ 0.82
SCN4AP35499 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SCN4AP35499 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC20.18■□□□□ 0.82
SCN4AP35499 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SCN4AP35499 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SCN4AP35499 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
SCN4AP35499 FAM220BP-201ENST00000377689 816 ntBASIC20.18■□□□□ 0.82
SCN4AP35499 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC20.18■□□□□ 0.82
SCN4AP35499 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SCN4AP35499 AC007541.1-201ENST00000570282 1469 ntBASIC20.18■□□□□ 0.82
SCN4AP35499 SLC22A20-204ENST00000530038 1673 ntBASIC20.18■□□□□ 0.82
SCN4AP35499 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
SCN4AP35499 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SCN4AP35499 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC20.18■□□□□ 0.82
SCN4AP35499 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC20.18■□□□□ 0.82
SCN4AP35499 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
SCN4AP35499 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SCN4AP35499 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
SCN4AP35499 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
SCN4AP35499 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC20.18■□□□□ 0.82
SCN4AP35499 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC20.18■□□□□ 0.82
SCN4AP35499 AP005482.1-201ENST00000563722 1273 ntBASIC20.18■□□□□ 0.82
SCN4AP35499 AL138918.1-201ENST00000568306 659 ntBASIC20.18■□□□□ 0.82
SCN4AP35499 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
SCN4AP35499 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
SCN4AP35499 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
SCN4AP35499 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SCN4AP35499 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.17■□□□□ 0.82
SCN4AP35499 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
SCN4AP35499 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC20.17■□□□□ 0.82
SCN4AP35499 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SCN4AP35499 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SCN4AP35499 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
SCN4AP35499 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC20.17■□□□□ 0.82
SCN4AP35499 MPV17-208ENST00000405076 603 ntTSL 5 BASIC20.17■□□□□ 0.82
SCN4AP35499 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC20.17■□□□□ 0.82
SCN4AP35499 KRT223P-202ENST00000449164 1292 ntBASIC20.17■□□□□ 0.82
SCN4AP35499 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SCN4AP35499 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC20.17■□□□□ 0.82
SCN4AP35499 AC008494.3-201ENST00000606615 944 ntBASIC20.17■□□□□ 0.82
SCN4AP35499 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.17■□□□□ 0.82
SCN4AP35499 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC20.17■□□□□ 0.82
SCN4AP35499 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
SCN4AP35499 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SCN4AP35499 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC20.17■□□□□ 0.82
SCN4AP35499 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SCN4AP35499 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC20.16■□□□□ 0.82
SCN4AP35499 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SCN4AP35499 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SCN4AP35499 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SCN4AP35499 RPF1-202ENST00000370656 724 ntTSL 2 BASIC20.16■□□□□ 0.82
SCN4AP35499 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
SCN4AP35499 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC20.16■□□□□ 0.82
SCN4AP35499 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC20.16■□□□□ 0.82
SCN4AP35499 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC20.16■□□□□ 0.82
SCN4AP35499 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SCN4AP35499 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC20.16■□□□□ 0.82
SCN4AP35499 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC20.16■□□□□ 0.82
SCN4AP35499 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC20.16■□□□□ 0.82
SCN4AP35499 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SCN4AP35499 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SCN4AP35499 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC20.16■□□□□ 0.82
SCN4AP35499 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SCN4AP35499 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC20.16■□□□□ 0.82
SCN4AP35499 AL035456.1-201ENST00000456064 1369 ntBASIC20.16■□□□□ 0.82
SCN4AP35499 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
SCN4AP35499 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SCN4AP35499 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SCN4AP35499 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.16■□□□□ 0.82
SCN4AP35499 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
SCN4AP35499 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
SCN4AP35499 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SCN4AP35499 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SCN4AP35499 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SCN4AP35499 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
SCN4AP35499 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC20.16■□□□□ 0.82
SCN4AP35499 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SCN4AP35499 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SCN4AP35499 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SCN4AP35499 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC20.16■□□□□ 0.82
SCN4AP35499 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC20.16■□□□□ 0.82
SCN4AP35499 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC20.16■□□□□ 0.82
SCN4AP35499 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms