Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SHMT2P34897 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SHMT2P34897 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SHMT2P34897 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC17■□□□□ 0.31
SHMT2P34897 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC17■□□□□ 0.31
SHMT2P34897 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17■□□□□ 0.31
SHMT2P34897 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC17■□□□□ 0.31
SHMT2P34897 AL160237.2-201ENST00000556165 472 ntBASIC17■□□□□ 0.31
SHMT2P34897 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC17■□□□□ 0.31
SHMT2P34897 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
SHMT2P34897 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17■□□□□ 0.31
SHMT2P34897 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
SHMT2P34897 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17■□□□□ 0.31
SHMT2P34897 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC17■□□□□ 0.31
SHMT2P34897 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SHMT2P34897 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
SHMT2P34897 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17■□□□□ 0.31
SHMT2P34897 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC17■□□□□ 0.31
SHMT2P34897 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
SHMT2P34897 AC079776.2-201ENST00000641154 1609 ntBASIC16.99■□□□□ 0.31
SHMT2P34897 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
SHMT2P34897 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC16.99■□□□□ 0.31
SHMT2P34897 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SHMT2P34897 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SHMT2P34897 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC16.99■□□□□ 0.31
SHMT2P34897 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SHMT2P34897 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SHMT2P34897 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
SHMT2P34897 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC16.99■□□□□ 0.31
SHMT2P34897 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC16.99■□□□□ 0.31
SHMT2P34897 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.99■□□□□ 0.31
SHMT2P34897 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC16.99■□□□□ 0.31
SHMT2P34897 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
SHMT2P34897 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SHMT2P34897 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SHMT2P34897 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SHMT2P34897 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SHMT2P34897 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
SHMT2P34897 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
SHMT2P34897 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
SHMT2P34897 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SHMT2P34897 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC16.99■□□□□ 0.31
SHMT2P34897 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.99■□□□□ 0.31
SHMT2P34897 STK25P1-201ENST00000585406 838 ntBASIC16.99■□□□□ 0.31
SHMT2P34897 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.99■□□□□ 0.31
SHMT2P34897 CALM3-211ENST00000598871 561 ntTSL 4 BASIC16.99■□□□□ 0.31
SHMT2P34897 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC16.99■□□□□ 0.31
SHMT2P34897 VPS51-217ENST00000639871 243 ntTSL 5 BASIC16.99■□□□□ 0.31
SHMT2P34897 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SHMT2P34897 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
SHMT2P34897 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SHMT2P34897 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
SHMT2P34897 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SHMT2P34897 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SHMT2P34897 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SHMT2P34897 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SHMT2P34897 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SHMT2P34897 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SHMT2P34897 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC16.99■□□□□ 0.31
SHMT2P34897 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
SHMT2P34897 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHMT2P34897 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHMT2P34897 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHMT2P34897 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
SHMT2P34897 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC16.98■□□□□ 0.31
SHMT2P34897 SIGLEC16-201ENST00000599858 1437 ntBASIC16.98■□□□□ 0.31
SHMT2P34897 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHMT2P34897 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC16.98■□□□□ 0.31
SHMT2P34897 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHMT2P34897 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.98■□□□□ 0.31
SHMT2P34897 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC16.98■□□□□ 0.31
SHMT2P34897 SPDYE21P-201ENST00000413323 827 ntBASIC16.98■□□□□ 0.31
SHMT2P34897 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC16.98■□□□□ 0.31
SHMT2P34897 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC16.98■□□□□ 0.31
SHMT2P34897 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
SHMT2P34897 AC104692.2-201ENST00000603054 253 ntBASIC16.98■□□□□ 0.31
SHMT2P34897 AC064862.7-201ENST00000604520 867 ntBASIC16.98■□□□□ 0.31
SHMT2P34897 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.98■□□□□ 0.31
SHMT2P34897 AC073592.4-201ENST00000623827 446 ntBASIC16.98■□□□□ 0.31
SHMT2P34897 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC16.98■□□□□ 0.31
SHMT2P34897 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHMT2P34897 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
SHMT2P34897 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHMT2P34897 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SHMT2P34897 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
SHMT2P34897 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHMT2P34897 AL139384.1-201ENST00000612143 3047 ntBASIC16.98■□□□□ 0.31
SHMT2P34897 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHMT2P34897 AC132938.5-201ENST00000624980 1813 ntBASIC16.98■□□□□ 0.31
SHMT2P34897 AP001094.4-201ENST00000579008 2176 ntBASIC16.98■□□□□ 0.31
SHMT2P34897 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
SHMT2P34897 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.98■□□□□ 0.31
SHMT2P34897 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC16.97■□□□□ 0.31
SHMT2P34897 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
SHMT2P34897 LINC00304-203ENST00000565008 1864 ntBASIC16.97■□□□□ 0.31
SHMT2P34897 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SHMT2P34897 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SHMT2P34897 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SHMT2P34897 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC16.97■□□□□ 0.31
SHMT2P34897 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms