Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC17.27■□□□□ 0.36
MSH3P20585 AC079776.2-201ENST00000641154 1609 ntBASIC17.27■□□□□ 0.36
MSH3P20585 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
MSH3P20585 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.27■□□□□ 0.35
MSH3P20585 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
MSH3P20585 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
MSH3P20585 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
MSH3P20585 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
MSH3P20585 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
MSH3P20585 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSH3P20585 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSH3P20585 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSH3P20585 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSH3P20585 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSH3P20585 AC108860.2-201ENST00000562760 2183 ntBASIC17.26■□□□□ 0.35
MSH3P20585 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSH3P20585 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.26■□□□□ 0.35
MSH3P20585 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSH3P20585 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
MSH3P20585 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.26■□□□□ 0.35
MSH3P20585 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
MSH3P20585 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
MSH3P20585 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
MSH3P20585 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.26■□□□□ 0.35
MSH3P20585 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSH3P20585 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
MSH3P20585 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC17.26■□□□□ 0.35
MSH3P20585 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSH3P20585 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
MSH3P20585 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC17.26■□□□□ 0.35
MSH3P20585 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC17.26■□□□□ 0.35
MSH3P20585 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC17.26■□□□□ 0.35
MSH3P20585 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC17.26■□□□□ 0.35
MSH3P20585 FAAHP1-202ENST00000446499 1238 ntBASIC17.26■□□□□ 0.35
MSH3P20585 SIGLEC30P-201ENST00000455569 941 ntBASIC17.26■□□□□ 0.35
MSH3P20585 FGFR3P6-201ENST00000457012 610 ntBASIC17.26■□□□□ 0.35
MSH3P20585 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSH3P20585 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC17.26■□□□□ 0.35
MSH3P20585 AL139288.1-201ENST00000623748 933 ntBASIC17.26■□□□□ 0.35
MSH3P20585 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSH3P20585 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.26■□□□□ 0.35
MSH3P20585 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.26■□□□□ 0.35
MSH3P20585 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSH3P20585 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
MSH3P20585 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC17.26■□□□□ 0.35
MSH3P20585 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSH3P20585 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSH3P20585 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSH3P20585 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
MSH3P20585 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC17.26■□□□□ 0.35
MSH3P20585 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.26■□□□□ 0.35
MSH3P20585 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSH3P20585 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC17.26■□□□□ 0.35
MSH3P20585 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSH3P20585 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
MSH3P20585 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
MSH3P20585 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
MSH3P20585 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSH3P20585 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSH3P20585 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSH3P20585 ENSA-206ENST00000361631 725 ntTSL 2 BASIC17.25■□□□□ 0.35
MSH3P20585 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSH3P20585 BX005266.1-201ENST00000473402 457 ntBASIC17.25■□□□□ 0.35
MSH3P20585 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC17.25■□□□□ 0.35
MSH3P20585 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
MSH3P20585 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC17.25■□□□□ 0.35
MSH3P20585 AL121912.1-201ENST00000603683 238 ntBASIC17.25■□□□□ 0.35
MSH3P20585 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.25■□□□□ 0.35
MSH3P20585 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSH3P20585 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
MSH3P20585 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
MSH3P20585 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
MSH3P20585 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
MSH3P20585 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSH3P20585 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
MSH3P20585 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
MSH3P20585 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.24■□□□□ 0.35
MSH3P20585 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC17.24■□□□□ 0.35
MSH3P20585 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MSH3P20585 SIGLEC16-201ENST00000599858 1437 ntBASIC17.24■□□□□ 0.35
MSH3P20585 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
MSH3P20585 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC17.24■□□□□ 0.35
MSH3P20585 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MSH3P20585 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MSH3P20585 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
MSH3P20585 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
MSH3P20585 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
MSH3P20585 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MSH3P20585 HIST2H3DP1-201ENST00000401004 416 ntBASIC17.24■□□□□ 0.35
MSH3P20585 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC17.24■□□□□ 0.35
MSH3P20585 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
MSH3P20585 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
MSH3P20585 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
MSH3P20585 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC17.24■□□□□ 0.35
MSH3P20585 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC17.24■□□□□ 0.35
MSH3P20585 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC17.24■□□□□ 0.35
MSH3P20585 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
MSH3P20585 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC17.24■□□□□ 0.35
MSH3P20585 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
MSH3P20585 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms