| MUC1 | P15941 | LINC01315-202 | ENST00000424852 | 1142 nt | TSL 1 (best) BASIC | 14.9 | □□□□□ -0.02 | | |
| MUC1 | P15941 | AC069368.1-202 | ENST00000437723 | 750 nt | APPRIS P1 TSL 5 BASIC | 14.9 | □□□□□ -0.02 | | |
| MUC1 | P15941 | AP000867.3-201 | ENST00000524675 | 377 nt | BASIC | 14.9 | □□□□□ -0.02 | | |
| MUC1 | P15941 | AC139749.1-201 | ENST00000534584 | 1094 nt | TSL 3 BASIC | 14.9 | □□□□□ -0.02 | | |
| MUC1 | P15941 | AC007220.1-201 | ENST00000572466 | 1055 nt | TSL 3 BASIC | 14.9 | □□□□□ -0.02 | | |
| MUC1 | P15941 | AC005336.2-201 | ENST00000593183 | 939 nt | BASIC | 14.9 | □□□□□ -0.02 | | |
| MUC1 | P15941 | POLR2M-206 | ENST00000494490 | 1648 nt | TSL 5 BASIC | 14.9 | □□□□□ -0.02 | | |
| MUC1 | P15941 | EMB-204 | ENST00000508934 | 1617 nt | APPRIS ALT2 TSL 5 BASIC | 14.9 | □□□□□ -0.02 | | |
| MUC1 | P15941 | GFI1B-208 | ENST00000636263 | 1604 nt | TSL 5 BASIC | 14.9 | □□□□□ -0.02 | | |
| MUC1 | P15941 | MRTO4-201 | ENST00000330263 | 2315 nt | APPRIS P1 TSL 1 (best) BASIC | 14.9 | □□□□□ -0.02 | | |
| MUC1 | P15941 | MAP4K1-201 | ENST00000396857 | 2653 nt | APPRIS P1 TSL 5 BASIC | 14.9 | □□□□□ -0.02 | | |
| MUC1 | P15941 | LINC00683-201 | ENST00000578803 | 2221 nt | TSL 2 BASIC | 14.9 | □□□□□ -0.02 | | |
| MUC1 | P15941 | TCTN1-204 | ENST00000397659 | 1885 nt | APPRIS P4 TSL 1 (best) BASIC | 14.9 | □□□□□ -0.02 | | |
| MUC1 | P15941 | DIABLO-204 | ENST00000413918 | 1859 nt | TSL 2 BASIC | 14.9 | □□□□□ -0.02 | | |
| MUC1 | P15941 | LBX2-AS1-201 | ENST00000548978 | 1852 nt | TSL 3 BASIC | 14.9 | □□□□□ -0.02 | | |
| MUC1 | P15941 | TRIM7-201 | ENST00000274773 | 2840 nt | APPRIS P1 TSL 1 (best) BASIC | 14.9 | □□□□□ -0.02 | | |
| MUC1 | P15941 | HARS-201 | ENST00000307633 | 1780 nt | TSL 2 BASIC | 14.9 | □□□□□ -0.02 | | |
| MUC1 | P15941 | KIRREL1-202 | ENST00000360089 | 3304 nt | TSL 1 (best) BASIC | 14.9 | □□□□□ -0.02 | | |
| MUC1 | P15941 | SYNC-202 | ENST00000409190 | 3398 nt | APPRIS P3 TSL 2 BASIC | 14.9 | □□□□□ -0.02 | | |
| MUC1 | P15941 | HSD11B1L-223 | ENST00000616276 | 1580 nt | APPRIS ALT2 TSL 5 BASIC | 14.9 | □□□□□ -0.02 | | |
| MUC1 | P15941 | FAM135A-205 | ENST00000418814 | 6415 nt | TSL 5 BASIC | 14.9 | □□□□□ -0.02 | | |
| MUC1 | P15941 | GAS7-213 | ENST00000580865 | 2417 nt | TSL 1 (best) BASIC | 14.9 | □□□□□ -0.02 | | |
| MUC1 | P15941 | COL27A1-201 | ENST00000356083 | 7790 nt | APPRIS P1 TSL 1 (best) BASIC | 14.9 | □□□□□ -0.02 | | |
| MUC1 | P15941 | UBXN6-202 | ENST00000394765 | 1809 nt | TSL 1 (best) BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | AC009949.1-201 | ENST00000623048 | 1830 nt | BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | APOLD1-202 | ENST00000356591 | 4646 nt | APPRIS P1 TSL 1 (best) BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | GAREM2-202 | ENST00000407684 | 5138 nt | TSL 2 BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | ANXA6-201 | ENST00000354546 | 2593 nt | APPRIS P1 TSL 1 (best) BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | ANKRD24-202 | ENST00000318934 | 3906 nt | APPRIS P2 TSL 5 BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | CD151-203 | ENST00000397421 | 1486 nt | APPRIS P2 TSL 1 (best) BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | FLJ38576-201 | ENST00000623820 | 2459 nt | BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | WNK2-201 | ENST00000297954 | 7138 nt | APPRIS P2 TSL 1 (best) BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | C10orf10-201 | ENST00000298295 | 2120 nt | APPRIS P1 TSL 1 (best) BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | PRMT6-201 | ENST00000370078 | 2616 nt | APPRIS P1 BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | AL023806.1-201 | ENST00000603994 | 1649 nt | BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | C7orf31-201 | ENST00000283905 | 2673 nt | APPRIS P1 TSL 1 (best) BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | FIBP-202 | ENST00000357519 | 1248 nt | APPRIS P1 TSL 1 (best) BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | BOLA1-202 | ENST00000369152 | 859 nt | APPRIS P1 TSL 1 (best) BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | ARMC12-202 | ENST00000373866 | 1254 nt | APPRIS P1 TSL 3 BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | C1QC-201 | ENST00000374637 | 1089 nt | APPRIS P1 TSL 3 BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | PSMB8-202 | ENST00000374882 | 1124 nt | APPRIS P1 TSL 1 (best) BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | LENG8-AS1-201 | ENST00000416022 | 582 nt | TSL 3 BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | POM121L3P-201 | ENST00000419331 | 1163 nt | BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | IGHV3-47-201 | ENST00000425060 | 335 nt | BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | CAMTA1-IT1-201 | ENST00000427317 | 365 nt | TSL 3 BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | ZNF436-AS1-203 | ENST00000454117 | 997 nt | TSL 1 (best) BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | COX18-204 | ENST00000507544 | 1086 nt | APPRIS ALT1 TSL 1 (best) BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | CDV3-207 | ENST00000508481 | 661 nt | TSL 3 BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | SELENOH-204 | ENST00000534355 | 818 nt | APPRIS P2 TSL 1 (best) BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | RAP1B-229 | ENST00000543393 | 874 nt | TSL 3 BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | AC074051.2-201 | ENST00000565115 | 352 nt | BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | FAM57A-205 | ENST00000572018 | 373 nt | TSL 3 BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | SPAG7-207 | ENST00000575142 | 1094 nt | TSL 1 (best) BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | CHRNB1-207 | ENST00000575379 | 1095 nt | TSL 2 BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | MAP3K11-201 | ENST00000309100 | 3566 nt | APPRIS P1 TSL 1 (best) BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | CLDN7-203 | ENST00000538261 | 1923 nt | TSL 5 BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | ACBD6-201 | ENST00000367595 | 1670 nt | APPRIS P1 TSL 1 (best) BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | PHF20L1-203 | ENST00000337920 | 2311 nt | TSL 1 (best) BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | TAF1D-203 | ENST00000448108 | 2082 nt | APPRIS P1 TSL 5 BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | ABHD14B-203 | ENST00000395008 | 1818 nt | APPRIS P1 TSL 1 (best) BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | CXADR-201 | ENST00000284878 | 6254 nt | APPRIS P3 TSL 1 (best) BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | ASXL1-212 | ENST00000620121 | 5374 nt | APPRIS ALT2 TSL 5 BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | SRSF1-208 | ENST00000584773 | 1317 nt | TSL 5 BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | IMP4-201 | ENST00000259239 | 1740 nt | APPRIS P1 TSL 1 (best) BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | PODXL-202 | ENST00000378555 | 2105 nt | APPRIS P3 TSL 1 (best) BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | CXXC1-201 | ENST00000285106 | 2936 nt | APPRIS P3 TSL 1 (best) BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | FGFR2-215 | ENST00000457416 | 3061 nt | APPRIS P3 TSL 1 (best) BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | NFATC4-223 | ENST00000555802 | 1476 nt | TSL 1 (best) BASIC | 14.89 | □□□□□ -0.03 | | |
| MUC1 | P15941 | GPR161-202 | ENST00000367835 | 2400 nt | APPRIS P1 TSL 2 BASIC | 14.88 | □□□□□ -0.03 | | |
| MUC1 | P15941 | PLIN1-201 | ENST00000300055 | 2953 nt | APPRIS P1 TSL 1 (best) BASIC | 14.88 | □□□□□ -0.03 | | |
| MUC1 | P15941 | FBXO7-201 | ENST00000266087 | 2195 nt | APPRIS P1 TSL 1 (best) BASIC | 14.88 | □□□□□ -0.03 | | |
| MUC1 | P15941 | FAM178B-204 | ENST00000490605 | 2710 nt | APPRIS ALT2 TSL 5 BASIC | 14.88 | □□□□□ -0.03 | | |
| MUC1 | P15941 | PHF1-202 | ENST00000374516 | 2330 nt | APPRIS P1 TSL 1 (best) BASIC | 14.88 | □□□□□ -0.03 | | |
| MUC1 | P15941 | NR1H3-202 | ENST00000405576 | 1352 nt | TSL 5 BASIC | 14.88 | □□□□□ -0.03 | | |
| MUC1 | P15941 | VAV2-203 | ENST00000406606 | 4691 nt | APPRIS P2 TSL 1 (best) BASIC | 14.88 | □□□□□ -0.03 | | |
| MUC1 | P15941 | RABEP1-202 | ENST00000537505 | 5365 nt | APPRIS P1 TSL 1 (best) BASIC | 14.88 | □□□□□ -0.03 | | |
| MUC1 | P15941 | NSUN5P1-202 | ENST00000421140 | 1535 nt | BASIC | 14.88 | □□□□□ -0.03 | | |
| MUC1 | P15941 | NSUN5P2-203 | ENST00000457352 | 1529 nt | BASIC | 14.88 | □□□□□ -0.03 | | |
| MUC1 | P15941 | DPP9-AS1-201 | ENST00000381796 | 3071 nt | TSL 2 BASIC | 14.88 | □□□□□ -0.03 | | |
| MUC1 | P15941 | GUCY1A2-202 | ENST00000347596 | 2532 nt | TSL 1 (best) BASIC | 14.88 | □□□□□ -0.03 | | |
| MUC1 | P15941 | SLC16A5-203 | ENST00000538213 | 1842 nt | APPRIS ALT2 TSL 2 BASIC | 14.88 | □□□□□ -0.03 | | |
| MUC1 | P15941 | OR10H5-201 | ENST00000308940 | 1132 nt | APPRIS P1 BASIC | 14.88 | □□□□□ -0.03 | | |
| MUC1 | P15941 | SZT2-202 | ENST00000372450 | 1191 nt | APPRIS ALT2 TSL 1 (best) BASIC | 14.88 | □□□□□ -0.03 | | |
| MUC1 | P15941 | TRAPPC3-202 | ENST00000373162 | 1056 nt | TSL 2 BASIC | 14.88 | □□□□□ -0.03 | | |
| MUC1 | P15941 | NFIB-201 | ENST00000380921 | 1274 nt | TSL 1 (best) BASIC | 14.88 | □□□□□ -0.03 | | |
| MUC1 | P15941 | UBE2E1-AS1-201 | ENST00000426702 | 778 nt | TSL 3 BASIC | 14.88 | □□□□□ -0.03 | | |
| MUC1 | P15941 | POLR2M-203 | ENST00000464277 | 910 nt | TSL 1 (best) BASIC | 14.88 | □□□□□ -0.03 | | |
| MUC1 | P15941 | SMIM4-202 | ENST00000476842 | 522 nt | TSL 4 BASIC | 14.88 | □□□□□ -0.03 | | |
| MUC1 | P15941 | AC136604.3-201 | ENST00000508188 | 429 nt | TSL 3 BASIC | 14.88 | □□□□□ -0.03 | | |
| MUC1 | P15941 | AP005901.3-202 | ENST00000581653 | 237 nt | BASIC | 14.88 | □□□□□ -0.03 | | |
| MUC1 | P15941 | ZNF786-201 | ENST00000316286 | 3144 nt | TSL 1 (best) BASIC | 14.88 | □□□□□ -0.03 | | |
| MUC1 | P15941 | SP2-201 | ENST00000376741 | 3112 nt | APPRIS P1 TSL 1 (best) BASIC | 14.88 | □□□□□ -0.03 | | |
| MUC1 | P15941 | CAMK1D-201 | ENST00000378845 | 1578 nt | APPRIS ALT2 TSL 1 (best) BASIC | 14.88 | □□□□□ -0.03 | | |
| MUC1 | P15941 | FO681492.1-201 | ENST00000623662 | 5321 nt | APPRIS P5 TSL 2 BASIC | 14.88 | □□□□□ -0.03 | | |
| MUC1 | P15941 | CAPN1-201 | ENST00000279247 | 3007 nt | APPRIS P1 TSL 1 (best) BASIC | 14.88 | □□□□□ -0.03 | | |
| MUC1 | P15941 | ABCC3-202 | ENST00000427699 | 1881 nt | TSL 1 (best) BASIC | 14.88 | □□□□□ -0.03 | | |
| MUC1 | P15941 | CD5L-201 | ENST00000368174 | 2191 nt | APPRIS P1 TSL 1 (best) BASIC | 14.88 | □□□□□ -0.03 | | |
| MUC1 | P15941 | TFAP2E-201 | ENST00000373235 | 2189 nt | APPRIS P1 TSL 1 (best) BASIC | 14.88 | □□□□□ -0.03 | | |
| MUC1 | P15941 | ZNF414-202 | ENST00000393927 | 2300 nt | APPRIS P1 TSL 1 (best) BASIC | 14.88 | □□□□□ -0.03 | | |
| MUC1 | P15941 | NEK3-206 | ENST00000611833 | 2345 nt | APPRIS ALT2 TSL 5 BASIC | 14.88 | □□□□□ -0.03 | | |