Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
LDB2O43679 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
LDB2O43679 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.32■□□□□ 0.36
LDB2O43679 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LDB2O43679 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LDB2O43679 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.32■□□□□ 0.36
LDB2O43679 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
LDB2O43679 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LDB2O43679 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LDB2O43679 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LDB2O43679 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LDB2O43679 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LDB2O43679 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC17.32■□□□□ 0.36
LDB2O43679 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LDB2O43679 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LDB2O43679 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LDB2O43679 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LDB2O43679 ACTG1P4-201ENST00000425123 1122 ntBASIC17.32■□□□□ 0.36
LDB2O43679 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.32■□□□□ 0.36
LDB2O43679 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC17.32■□□□□ 0.36
LDB2O43679 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LDB2O43679 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC17.32■□□□□ 0.36
LDB2O43679 NKAPP1-205ENST00000585790 367 ntBASIC17.32■□□□□ 0.36
LDB2O43679 MTDHP3-201ENST00000594186 672 ntBASIC17.32■□□□□ 0.36
LDB2O43679 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LDB2O43679 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LDB2O43679 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.32■□□□□ 0.36
LDB2O43679 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC17.32■□□□□ 0.36
LDB2O43679 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC17.32■□□□□ 0.36
LDB2O43679 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC17.31■□□□□ 0.36
LDB2O43679 AC097637.2-201ENST00000624096 1997 ntBASIC17.31■□□□□ 0.36
LDB2O43679 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LDB2O43679 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
LDB2O43679 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
LDB2O43679 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LDB2O43679 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LDB2O43679 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
LDB2O43679 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LDB2O43679 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LDB2O43679 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LDB2O43679 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LDB2O43679 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
LDB2O43679 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
LDB2O43679 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
LDB2O43679 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LDB2O43679 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC17.31■□□□□ 0.36
LDB2O43679 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC17.31■□□□□ 0.36
LDB2O43679 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
LDB2O43679 FGFR3P6-201ENST00000457012 610 ntBASIC17.31■□□□□ 0.36
LDB2O43679 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC17.31■□□□□ 0.36
LDB2O43679 BX005266.1-201ENST00000473402 457 ntBASIC17.31■□□□□ 0.36
LDB2O43679 S100A2-206ENST00000497140 697 ntTSL 2 BASIC17.31■□□□□ 0.36
LDB2O43679 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC17.31■□□□□ 0.36
LDB2O43679 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
LDB2O43679 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
LDB2O43679 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC17.31■□□□□ 0.36
LDB2O43679 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC17.31■□□□□ 0.36
LDB2O43679 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC17.31■□□□□ 0.36
LDB2O43679 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LDB2O43679 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
LDB2O43679 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LDB2O43679 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.31■□□□□ 0.36
LDB2O43679 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC17.31■□□□□ 0.36
LDB2O43679 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC17.31■□□□□ 0.36
LDB2O43679 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
LDB2O43679 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC17.31■□□□□ 0.36
LDB2O43679 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC17.31■□□□□ 0.36
LDB2O43679 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LDB2O43679 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
LDB2O43679 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.3■□□□□ 0.36
LDB2O43679 PRORSD1P-202ENST00000563365 2154 ntBASIC17.3■□□□□ 0.36
LDB2O43679 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LDB2O43679 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
LDB2O43679 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LDB2O43679 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LDB2O43679 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
LDB2O43679 GID4-202ENST00000376345 1391 ntTSL 3 BASIC17.3■□□□□ 0.36
LDB2O43679 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
LDB2O43679 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
LDB2O43679 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.3■□□□□ 0.36
LDB2O43679 AL121761.2-201ENST00000598007 1648 ntBASIC17.3■□□□□ 0.36
LDB2O43679 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LDB2O43679 AL356309.3-201ENST00000624132 1934 ntBASIC17.3■□□□□ 0.36
LDB2O43679 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LDB2O43679 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
LDB2O43679 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
LDB2O43679 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC17.3■□□□□ 0.36
LDB2O43679 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC17.3■□□□□ 0.36
LDB2O43679 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
LDB2O43679 UNC93B7-201ENST00000509439 705 ntBASIC17.3■□□□□ 0.36
LDB2O43679 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
LDB2O43679 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LDB2O43679 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LDB2O43679 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LDB2O43679 AL691432.3-201ENST00000621860 400 ntBASIC17.3■□□□□ 0.36
LDB2O43679 AL139288.1-201ENST00000623748 933 ntBASIC17.3■□□□□ 0.36
LDB2O43679 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LDB2O43679 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
LDB2O43679 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC17.3■□□□□ 0.36
LDB2O43679 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms