Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
CUX2O14529 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
CUX2O14529 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
CUX2O14529 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
CUX2O14529 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
CUX2O14529 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC29.25■■■□□ 2.27
CUX2O14529 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC29.25■■■□□ 2.27
CUX2O14529 FOS-206ENST00000555347 1280 ntTSL 2 BASIC29.25■■■□□ 2.27
CUX2O14529 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC29.25■■■□□ 2.27
CUX2O14529 WASH6P-202ENST00000359512 1437 ntBASIC29.25■■■□□ 2.27
CUX2O14529 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC29.25■■■□□ 2.27
CUX2O14529 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
CUX2O14529 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
CUX2O14529 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC29.25■■■□□ 2.27
CUX2O14529 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
CUX2O14529 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC29.25■■■□□ 2.27
CUX2O14529 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
CUX2O14529 HARS-201ENST00000307633 1780 ntTSL 2 BASIC29.25■■■□□ 2.27
CUX2O14529 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC29.24■■■□□ 2.27
CUX2O14529 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
CUX2O14529 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
CUX2O14529 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
CUX2O14529 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC29.24■■■□□ 2.27
CUX2O14529 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
CUX2O14529 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
CUX2O14529 FXNP2-201ENST00000411625 547 ntBASIC29.24■■■□□ 2.27
CUX2O14529 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC29.24■■■□□ 2.27
CUX2O14529 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC29.24■■■□□ 2.27
CUX2O14529 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC29.24■■■□□ 2.27
CUX2O14529 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC29.24■■■□□ 2.27
CUX2O14529 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC29.24■■■□□ 2.27
CUX2O14529 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC29.24■■■□□ 2.27
CUX2O14529 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC29.24■■■□□ 2.27
CUX2O14529 MIR4515-201ENST00000584082 81 ntBASIC29.24■■■□□ 2.27
CUX2O14529 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC29.24■■■□□ 2.27
CUX2O14529 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC29.24■■■□□ 2.27
CUX2O14529 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC29.24■■■□□ 2.27
CUX2O14529 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
CUX2O14529 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
CUX2O14529 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
CUX2O14529 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
CUX2O14529 PC-208ENST00000529047 1607 ntTSL 3 BASIC29.24■■■□□ 2.27
CUX2O14529 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
CUX2O14529 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC29.24■■■□□ 2.27
CUX2O14529 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC29.24■■■□□ 2.27
CUX2O14529 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC29.23■■■□□ 2.27
CUX2O14529 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC29.23■■■□□ 2.27
CUX2O14529 APOC3-202ENST00000375345 604 ntTSL 5 BASIC29.23■■■□□ 2.27
CUX2O14529 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC29.23■■■□□ 2.27
CUX2O14529 GNAQP1-201ENST00000444815 1067 ntBASIC29.23■■■□□ 2.27
CUX2O14529 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC29.23■■■□□ 2.27
CUX2O14529 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
CUX2O14529 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
CUX2O14529 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
CUX2O14529 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC29.23■■■□□ 2.27
CUX2O14529 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
CUX2O14529 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC29.23■■■□□ 2.27
CUX2O14529 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
CUX2O14529 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC29.23■■■□□ 2.27
CUX2O14529 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC29.23■■■□□ 2.27
CUX2O14529 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
CUX2O14529 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC29.23■■■□□ 2.27
CUX2O14529 AC027307.2-201ENST00000591252 911 ntBASIC29.23■■■□□ 2.27
CUX2O14529 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC29.23■■■□□ 2.27
CUX2O14529 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC29.23■■■□□ 2.27
CUX2O14529 AC018529.1-201ENST00000613063 361 ntBASIC29.23■■■□□ 2.27
CUX2O14529 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
CUX2O14529 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC29.22■■■□□ 2.27
CUX2O14529 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
CUX2O14529 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC29.22■■■□□ 2.27
CUX2O14529 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
CUX2O14529 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC29.22■■■□□ 2.27
CUX2O14529 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
CUX2O14529 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
CUX2O14529 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
CUX2O14529 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
CUX2O14529 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
CUX2O14529 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
CUX2O14529 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
CUX2O14529 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
CUX2O14529 MIR1247-201ENST00000408206 136 ntBASIC29.22■■■□□ 2.27
CUX2O14529 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC29.22■■■□□ 2.27
CUX2O14529 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
CUX2O14529 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC29.22■■■□□ 2.27
CUX2O14529 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC29.22■■■□□ 2.27
CUX2O14529 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC29.22■■■□□ 2.27
CUX2O14529 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
CUX2O14529 AC006538.1-201ENST00000567905 1585 ntBASIC29.21■■■□□ 2.27
CUX2O14529 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC29.21■■■□□ 2.27
CUX2O14529 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
CUX2O14529 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
CUX2O14529 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC29.21■■■□□ 2.27
CUX2O14529 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
CUX2O14529 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
CUX2O14529 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
CUX2O14529 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC29.21■■■□□ 2.27
CUX2O14529 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
CUX2O14529 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC29.21■■■□□ 2.27
CUX2O14529 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC29.21■■■□□ 2.27
CUX2O14529 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC29.21■■■□□ 2.27
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms