Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC188H7C350 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
CCDC188H7C350 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC188H7C350 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
CCDC188H7C350 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC188H7C350 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC188H7C350 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC188H7C350 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC188H7C350 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC188H7C350 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC188H7C350 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC18.04■□□□□ 0.48
CCDC188H7C350 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC188H7C350 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC188H7C350 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC188H7C350 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC18.04■□□□□ 0.48
CCDC188H7C350 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC188H7C350 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC188H7C350 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC188H7C350 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC18.04■□□□□ 0.48
CCDC188H7C350 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
CCDC188H7C350 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC18.04■□□□□ 0.48
CCDC188H7C350 AC109462.3-201ENST00000573934 613 ntBASIC18.04■□□□□ 0.48
CCDC188H7C350 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC18.04■□□□□ 0.48
CCDC188H7C350 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC18.04■□□□□ 0.48
CCDC188H7C350 GPR32P1-201ENST00000601788 811 ntBASIC18.04■□□□□ 0.48
CCDC188H7C350 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC18.04■□□□□ 0.48
CCDC188H7C350 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
CCDC188H7C350 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC18.04■□□□□ 0.48
CCDC188H7C350 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC188H7C350 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC188H7C350 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC18.04■□□□□ 0.48
CCDC188H7C350 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC188H7C350 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC188H7C350 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC188H7C350 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC188H7C350 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC18.03■□□□□ 0.48
CCDC188H7C350 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC188H7C350 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC188H7C350 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC18.03■□□□□ 0.48
CCDC188H7C350 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC188H7C350 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CCDC188H7C350 CES3-203ENST00000543856 3178 ntTSL 2 BASIC18.03■□□□□ 0.48
CCDC188H7C350 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC188H7C350 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
CCDC188H7C350 SAPCD2P2-201ENST00000431719 1174 ntBASIC18.03■□□□□ 0.48
CCDC188H7C350 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC18.03■□□□□ 0.48
CCDC188H7C350 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC18.03■□□□□ 0.48
CCDC188H7C350 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC18.03■□□□□ 0.48
CCDC188H7C350 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC18.03■□□□□ 0.48
CCDC188H7C350 AL023973.1-201ENST00000624619 620 ntBASIC18.03■□□□□ 0.48
CCDC188H7C350 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC188H7C350 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC18.03■□□□□ 0.48
CCDC188H7C350 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CCDC188H7C350 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC188H7C350 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
CCDC188H7C350 CICP6-201ENST00000457191 2729 ntBASIC18.03■□□□□ 0.48
CCDC188H7C350 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC188H7C350 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC188H7C350 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC188H7C350 AL513523.2-202ENST00000427283 2040 ntBASIC18.03■□□□□ 0.48
CCDC188H7C350 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC188H7C350 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC188H7C350 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC188H7C350 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC188H7C350 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC188H7C350 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC188H7C350 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CCDC188H7C350 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC188H7C350 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC188H7C350 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC18.02■□□□□ 0.48
CCDC188H7C350 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC18.02■□□□□ 0.48
CCDC188H7C350 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC188H7C350 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC18.02■□□□□ 0.48
CCDC188H7C350 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC188H7C350 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC18.02■□□□□ 0.48
CCDC188H7C350 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CCDC188H7C350 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC188H7C350 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC188H7C350 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC188H7C350 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC188H7C350 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC18.02■□□□□ 0.48
CCDC188H7C350 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC18.02■□□□□ 0.48
CCDC188H7C350 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC188H7C350 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC18.02■□□□□ 0.48
CCDC188H7C350 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
CCDC188H7C350 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC18.02■□□□□ 0.48
CCDC188H7C350 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC188H7C350 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC18.02■□□□□ 0.48
CCDC188H7C350 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC18.02■□□□□ 0.48
CCDC188H7C350 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC18.02■□□□□ 0.48
CCDC188H7C350 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CCDC188H7C350 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC18.02■□□□□ 0.48
CCDC188H7C350 AC140113.3-201ENST00000605663 199 ntBASIC18.02■□□□□ 0.48
CCDC188H7C350 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC188H7C350 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC18.02■□□□□ 0.48
CCDC188H7C350 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC18.02■□□□□ 0.48
CCDC188H7C350 AL031432.5-201ENST00000641059 760 ntBASIC18.02■□□□□ 0.48
CCDC188H7C350 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC18.02■□□□□ 0.48
CCDC188H7C350 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC188H7C350 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms