Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
RHBDD3Q9Y3P4 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RHBDD3Q9Y3P4 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
RHBDD3Q9Y3P4 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RHBDD3Q9Y3P4 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
RHBDD3Q9Y3P4 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RHBDD3Q9Y3P4 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RHBDD3Q9Y3P4 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RHBDD3Q9Y3P4 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC15.23■□□□□ 0.03
RHBDD3Q9Y3P4 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC15.23■□□□□ 0.03
RHBDD3Q9Y3P4 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RHBDD3Q9Y3P4 BX276092.7-203ENST00000637198 1536 ntBASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 AC060834.1-201ENST00000443027 2032 ntBASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 LYSMD4-203ENST00000378904 2122 ntBASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 AC124864.1-201ENST00000623408 392 ntBASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 VPS72-207ENST00000640458 689 ntTSL 5 BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 AC116353.5-201ENST00000638148 1699 ntBASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC15.22■□□□□ 0.03
RHBDD3Q9Y3P4 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RHBDD3Q9Y3P4 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC15.21■□□□□ 0.03
RHBDD3Q9Y3P4 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RHBDD3Q9Y3P4 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RHBDD3Q9Y3P4 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
RHBDD3Q9Y3P4 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
RHBDD3Q9Y3P4 STK24-203ENST00000397517 4578 ntTSL 2 BASIC15.21■□□□□ 0.03
RHBDD3Q9Y3P4 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
RHBDD3Q9Y3P4 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
RHBDD3Q9Y3P4 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
RHBDD3Q9Y3P4 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RHBDD3Q9Y3P4 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RHBDD3Q9Y3P4 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
RHBDD3Q9Y3P4 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
RHBDD3Q9Y3P4 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC15.21■□□□□ 0.03
RHBDD3Q9Y3P4 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RHBDD3Q9Y3P4 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
RHBDD3Q9Y3P4 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
RHBDD3Q9Y3P4 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
RHBDD3Q9Y3P4 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RHBDD3Q9Y3P4 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
RHBDD3Q9Y3P4 FXN-203ENST00000396366 922 ntTSL 2 BASIC15.21■□□□□ 0.03
RHBDD3Q9Y3P4 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC15.21■□□□□ 0.03
RHBDD3Q9Y3P4 RN7SL606P-201ENST00000472779 293 ntBASIC15.21■□□□□ 0.03
RHBDD3Q9Y3P4 CD320-202ENST00000537716 1119 ntTSL 2 BASIC15.21■□□□□ 0.03
RHBDD3Q9Y3P4 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC15.21■□□□□ 0.03
RHBDD3Q9Y3P4 IGHV3-41-201ENST00000613121 348 ntBASIC15.21■□□□□ 0.03
RHBDD3Q9Y3P4 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC15.21■□□□□ 0.03
RHBDD3Q9Y3P4 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RHBDD3Q9Y3P4 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
RHBDD3Q9Y3P4 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RHBDD3Q9Y3P4 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
RHBDD3Q9Y3P4 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RHBDD3Q9Y3P4 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
RHBDD3Q9Y3P4 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
RHBDD3Q9Y3P4 TBC1D3P5-201ENST00000579401 1545 ntBASIC15.21■□□□□ 0.03
RHBDD3Q9Y3P4 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC15.21■□□□□ 0.02
RHBDD3Q9Y3P4 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC15.21■□□□□ 0.02
RHBDD3Q9Y3P4 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC15.21■□□□□ 0.02
RHBDD3Q9Y3P4 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
RHBDD3Q9Y3P4 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
RHBDD3Q9Y3P4 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
RHBDD3Q9Y3P4 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC15.21■□□□□ 0.02
RHBDD3Q9Y3P4 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
RHBDD3Q9Y3P4 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms